| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,556,319 – 5,556,419 |
| Length | 100 |
| Max. P | 0.605018 |
| Location | 5,556,319 – 5,556,419 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 79.71 |
| Mean single sequence MFE | -25.82 |
| Consensus MFE | -14.91 |
| Energy contribution | -14.88 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.605018 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5556319 100 + 23771897 AUUGCGCAUCCACUUAGCAGUUGGUGAUUUUCAAAAUGAGAUAACACCUCACAUUUUGGGGAUCGGCUUUUAUAUUU-----GAACCUCAGCUCAGCCGAGCAAC .((((((.........))..(((((((((..(((((((.((.......)).)))))))..))))((((((((....)-----)))....))))..))))))))). ( -25.40) >DroSec_CAF1 20331 89 + 1 AUUGCGCAUCCACUUAACAGUUGGUGAUUUUCAAAAUGAGAUAACACCUCACAUUUUGGGGAUGGGCUUUUAUAUUUCGGU----------------CGAGCAAC .((((.(((((.((.....((.((((..((((.....))))...))))..)).....)))))))((((..........)))----------------)..)))). ( -20.40) >DroSim_CAF1 20724 100 + 1 AUUGCGCAUCCACUUAGCAGUUGGUGAUUUUAAAAAUGAGAUAACACCUCACAUUUUGGGGAUGGGCUUUUAUAUUUCGGUUGAACCU-----CAGCCGAGCAAC ...((.(((((.((.....((.((((((((((....))))))..))))..)).....))))))).))........((((((((.....-----)))))))).... ( -28.90) >DroEre_CAF1 20576 99 + 1 AUUGCGCAUCCACUUAGCAGUUGCUGAUUUUCAAAAUGAGAUAACACCUCACAUUUUGAGGAUGGGUUUUUAUAUUU-GGUUGAGCUC-----CAGCCGAGCAAC .((((.(((((..(((((....)))))...((((((((.((.......)).)))))))))))))...........((-(((((.....-----))))))))))). ( -30.80) >DroYak_CAF1 21761 99 + 1 AUUGCGCAUUCACUUAGCAGUGGGUGAUUUUCAAAAUGAGAUAACACCUCACAUUUUGAGGAUGGGUUUUUAUAUUU-GGUUGAGCUU-----CAGUCGAGCAGC .((((.((((((((....))))))))((((((((((((.((.......)).))))))))))))............((-(..((.....-----))..))))))). ( -25.80) >DroAna_CAF1 21531 93 + 1 AUUGCAGAUCCACUUAGCAGUUGGAGAUUUUCAAAAUGCGAUAACAAGUUUCAUUUUGGGAGUGCUAUUU----UUU-GGGCAAUCUC-----UGCUCAAGU--C ...((...((((((....)).)))).(((..(((((((.(((.....))).)))))))..))))).....----(((-(((((.....-----)))))))).--. ( -23.60) >consensus AUUGCGCAUCCACUUAGCAGUUGGUGAUUUUCAAAAUGAGAUAACACCUCACAUUUUGGGGAUGGGCUUUUAUAUUU_GGUUGAACUU_____CAGCCGAGCAAC .((((.((((.(((....))).))))((((((((((((.((.......)).)))))))))))).....................................)))). (-14.91 = -14.88 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:33 2006