| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,550,518 – 5,550,612 |
| Length | 94 |
| Max. P | 0.970480 |
| Location | 5,550,518 – 5,550,612 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 83.51 |
| Mean single sequence MFE | -27.78 |
| Consensus MFE | -24.66 |
| Energy contribution | -24.85 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.89 |
| SVM decision value | 1.66 |
| SVM RNA-class probability | 0.970480 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5550518 94 - 23771897 AU--CAUUUAAUUUUCUGAUCAACAU--CUAGUCUGCGCUCAACUAAGCUUUGCAGUUCAACUGACCUGUUGAGCGUUGAUUGGUCGGUUGGCAGCCA ..--...........(((.(((((..--((((((.(((((((((.........(((.....)))....))))))))).))))))...))))))))... ( -31.02) >DroSec_CAF1 14539 94 - 1 AU--CAUUUAAUUUUUUGAUCAACAU--CUAGUGUGCGCUGAACUAAGCUUUUCAGUGCAACUGACCCGUUGAGCGUUGAUUGGUCGGUUGGCGGCCA ..--.............(((((((..--.((((.(((((((((........)))))))))))))....(.....))))))))(((((.....))))). ( -27.90) >DroSim_CAF1 14489 94 - 1 AU--CAUUUAAUUUUUUGAUCAACAU--CUAGUGUGCGCUGAACUAAGCAUUUCAGUUCAACUGACCUGUUGAGCGUUGAUUGGUCGGUUGGCAGCCA ..--...........(..((((((..--.........(((......)))......(((((((......)))))))))))))..)..(((.....))). ( -24.80) >DroYak_CAF1 14936 90 - 1 ACAUUAUGAAA----GUGAUCAGCAUUUUUAGUCUGCGCUAAACUAAGCAUUUGAGUUCAACUGACCCGUUGAGCGCUGAUUGGCCG----GCGGCCA ...........----..(((((((.............(((......)))......(((((((......))))))))))))))((((.----..)))). ( -27.40) >consensus AU__CAUUUAAUUUUUUGAUCAACAU__CUAGUCUGCGCUGAACUAAGCAUUUCAGUUCAACUGACCCGUUGAGCGUUGAUUGGUCGGUUGGCAGCCA .................(((((((.............(((......)))......(((((((......))))))))))))))(((((.....))))). (-24.66 = -24.85 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:32 2006