| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,547,991 – 5,548,095 |
| Length | 104 |
| Max. P | 0.658218 |
| Location | 5,547,991 – 5,548,095 |
|---|---|
| Length | 104 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 77.44 |
| Mean single sequence MFE | -22.15 |
| Consensus MFE | -14.54 |
| Energy contribution | -14.98 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.658218 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5547991 104 + 23771897 GUCGAAGUUUUC-GAGAAUUUCAAAGAAGUGCUGGGUGCAUAAUUUGUGAUUU---UUUGUGAGUGAUAAUAACUUAUUUAC-AUAAAAUGUGUAGGGGUUACUUCAGU ...(((((((..-..)))))))...((((((((...((((((.((((((....---...((((((.......))))))...)-))))).))))))..)).))))))... ( -23.70) >DroSec_CAF1 11975 104 + 1 GUUGAAGUUUUGGGAGAACUUCAAAGAAGUGCAGGGUGCAUAAC----GAUUUUUUUUUGUGAGUGAUAAUAACUUAUUUAC-AUAAAAUGUAUAGGGGUUACAUCAGU .(((((((((.....)))))))))....((((.....)))).((----((.......))))...((((..((((((...(((-((...)))))...)))))).)))).. ( -20.70) >DroEre_CAF1 12165 99 + 1 GUUGAAGUUUUA-GAGAAUUUCAAAAGAGUGCUGGGUGCAUAAC----GAUU-----UUGUAAGUGCUUAUAACCUAUUUACCAAAAAUCGUAGAAGGGUUACUUCAGU .(((((((((..-..)))))))))....((((.....)))).((----((((-----(((((((((.........)))))))..)))))))).((((.....))))... ( -23.10) >DroYak_CAF1 12321 87 + 1 GUUGAAGUUGUA-CAGAAUUUCAAAGAAGUGCUGGGUGCAU--------------------AAGUGCUUAUAACUUAUUUAC-AAAAAACGUGAAAGAGUUACUUCAGU .((((((((...-...)))))))).(((((..((((..(..--------------------..)..)))).(((((.(((((-.......))))).))))))))))... ( -21.10) >consensus GUUGAAGUUUUA_GAGAAUUUCAAAGAAGUGCUGGGUGCAUAAC____GAUU_____UUGUAAGUGAUAAUAACUUAUUUAC_AAAAAACGUAUAAGGGUUACUUCAGU .(((((((((.....))))))))).(((((((.....)))..............................(((((..(((((........)))))..)))))))))... (-14.54 = -14.98 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:31 2006