Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,542,120 – 5,542,220 |
Length | 100 |
Max. P | 0.796595 |
Location | 5,542,120 – 5,542,220 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 80.10 |
Mean single sequence MFE | -43.38 |
Consensus MFE | -29.67 |
Energy contribution | -30.45 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.22 |
Mean z-score | -1.71 |
Structure conservation index | 0.68 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.796595 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5542120 100 + 23771897 CUCGGCCAUGCGCUGGAUGUUCCUCAGAUCCUCGGCGGUGAUGCCAACGCGCUGCAGGGCCAUUCCGAAGGGCAUGGGCUGGAUCUGAAUCUGGGGGAUC-------------- ..((((.....))))(((.((((((((((((...((((((.((....)))))))).((.((((.((....)).)))).))))))))))....)))).)))-------------- ( -41.10) >DroVir_CAF1 6207 114 + 1 CUCGGCCAUGCGCUGAAUGUUGCGCAAAUCGUCAGCGGUGAUGCCCACGCGCUGCAGUGCCAUGCCCAGUGGCAUGUGCUGGAUCUGGAUCUGUGGCAUCUCGCGCUGUGGCAU ....(((((((((........)))))......((((((.((((((.((((((....(((((((.....))))))))))).((((....)))))))))))).).))))))))).. ( -50.10) >DroWil_CAF1 8443 96 + 1 CUCGGCAAUGCGCUGAAUGUUACGCAAAUCAUCGGCAGUAAUGCCGACACGUUGCAGGGCCAUGCCCAAGGGCAUGUGCUGGAUUUGGAUCUGGGG------------------ .(((((.....))))).......((((....((((((....))))))....))))..(((((((((....)))))).)))((((....))))....------------------ ( -37.80) >DroMoj_CAF1 6055 99 + 1 CUCGGCCAUGCGCUGAAUGUUGCGCAGAUCGUCGGCGGUGAUGCCCACACGCUGCAGUGCCAUACCCAGAGGCAUGUGCUGGAUCUGAAUCUGUGG---------------CAU ....(((((((((........))))(((((..((((((((.....))).)))))(((..(.((.((....)).)))..))))))))......))))---------------).. ( -37.70) >DroAna_CAF1 6780 100 + 1 CUCAGCCAUGCGCUGGAUGUUUCUCAGAUCCUCGGCGGUGAUACCAACGCGCUGGAGAGCCAUGCCGAAAGGCAUUGGCUGGAUCUGGAUCUGGGGCACC-------------- ........(((.(..(((.....((((((((((((((((.......)).))))))..(((((((((....)))).))))))))))))))))..).)))..-------------- ( -47.30) >DroPer_CAF1 7911 100 + 1 CUCGGCCAUGCGCUGGAUGCUGCGCAGAUCAUCGGCGGUGAUGCCCACACGCUGCAGGGCCAUGCCCAGGGGCAUGUGCUGGAUCUGGAUCUGUGGCAUC-------------- ..((((.....))))(((((..((((((((..((((((((.....))).)))))((((((((((((....)))))).)))....))))))))))))))))-------------- ( -46.30) >consensus CUCGGCCAUGCGCUGAAUGUUGCGCAGAUCAUCGGCGGUGAUGCCCACACGCUGCAGGGCCAUGCCCAAGGGCAUGUGCUGGAUCUGGAUCUGGGGCAUC______________ .(((((.....)))))......((((((((..(((((((.......)).)))))((((((((((((....)))))).)))....)))))))))))................... (-29.67 = -30.45 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:29 2006