Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,521,861 – 5,521,952 |
Length | 91 |
Max. P | 0.896158 |
Location | 5,521,861 – 5,521,952 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 92.64 |
Mean single sequence MFE | -23.06 |
Consensus MFE | -19.96 |
Energy contribution | -20.52 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.03 |
Mean z-score | -1.53 |
Structure conservation index | 0.87 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.896158 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5521861 91 + 23771897 GGGGAAUUAUGAAAUUUCUCUUUAACGAAACAUUGUUGGGGAAUUGUGAAAUGCCCGUUUCAA----CGCCUCAGCUUCCCGGCAAACAUUUCCA ((((((((....))))))))......((((..((((((((((....((((((....)))))).----.((....))))))))))))...)))).. ( -23.70) >DroSec_CAF1 83523 91 + 1 AGGGAAUUGUAAAAUUUCUCUUUAACGAAACUUUGUUGGGGAAUUGUGAAAUGCCUGUUUCAA----CGCCUCAGCUUCCCGGCAAACAUUUCCA ..((((.(((....((((........))))..((((((((((....((((((....)))))).----.((....))))))))))))))).)))). ( -24.30) >DroSim_CAF1 85269 91 + 1 AGGGAAUUGUGAAAUUUCUCUUUAACGAAACUUUGUUGGGGAAUUGUGAAAUGCCUGUUUCAA----CGCCUCAGCUUCCCGGCAAACAUUUCCA ..((((.(((....((((........))))..((((((((((....((((((....)))))).----.((....))))))))))))))).)))). ( -24.30) >DroEre_CAF1 84144 95 + 1 AGGGAAUUGUGAAAUUUCUCCUUAACGAAACAUUGUUGGGGAAUUGUGAAAUGCCUGCUUAAACACACGCCUCAGCUUUCCGCCAAACAUUUCCA ..((((.(((....((((........))))....(((((((...((((....(....).....))))..)))))))..........))).)))). ( -20.00) >DroYak_CAF1 72437 95 + 1 AGGGAAUUGUGAAAUUUCUCUUUAACGAAACAUUGUUGGGGAAUUGUGAAAUGCCUGUUUCAACAGACGCCUCAGCUUUCCGGCAAACAUUUCCA ..((((.(((....((((........))))..(((((((..(.(((((((((....))))).))))..((....)))..)))))))))).)))). ( -23.00) >consensus AGGGAAUUGUGAAAUUUCUCUUUAACGAAACAUUGUUGGGGAAUUGUGAAAUGCCUGUUUCAA____CGCCUCAGCUUCCCGGCAAACAUUUCCA ..((((.(((....((((........))))..((((((((((....((((((....))))))......((....))))))))))))))).)))). (-19.96 = -20.52 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:26 2006