Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 568,545 – 568,853 |
Length | 308 |
Max. P | 0.995623 |
Location | 568,545 – 568,665 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.27 |
Mean single sequence MFE | -48.42 |
Consensus MFE | -46.34 |
Energy contribution | -46.77 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.05 |
Mean z-score | -2.35 |
Structure conservation index | 0.96 |
SVM decision value | 2.04 |
SVM RNA-class probability | 0.986466 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 568545 120 + 23771897 CACCUGUGCGUUUGUCUAUGACGUGCUAGGUUGGAGGAUGUGGAGUAUUUCUUUCCGCACUCGGGACAGAUGUGCUCGUCCUCCAGCAACGAAGUGCUGUUGAGGAUUUCGCCCUGCUCC .(((((..((((.......))))..).))))((((((((...((((((.((((((((....))))).))).))))))))))))))(((.((((((.((....)).))))))...)))... ( -47.40) >DroSec_CAF1 1 115 + 1 -----GUGCGUUUGUCUAUGACGUGCUAGGUUGGAGGAUGUGGAGUACUUCUUUCCGCACUCGGGACAGAUGUGCUCGUCCUCCAGCAGCGAAGUGCUGUUGAGGAUCUCGCCCUGCUCC -----(..((((.......))))..)(((((((((((((...((((((.((((((((....))))).))).)))))))))))))))).((((..(.((....)).)..)))).))).... ( -46.50) >DroSim_CAF1 1 120 + 1 CACCUGUGCGUUUGUCUAUGACGUGCUAGGUUGGAGGAUGUGGAGUACUUCUUUCCGCACUCGGGACAGAUGUGCUCGUCCUCCAGCAGCGAAGUGCUGUUGAGGAUUUCGCCCUGCUCC .(((((..((((.......))))..).))))((((((((...((((((.((((((((....))))).))).))))))))))))))((((((((((.((....)).)))))))..)))... ( -52.30) >DroEre_CAF1 1 115 + 1 -----GUGCGUUUGUCUAUGACGUGCCAGGUUGGAGGAUGUGGAGUACUUCUUUCCGCACUCGGGACAGAUGUGCUCGUCCUCCAGCAGCGAGCUGCUGUUGAGGAUUUCGCCCGGCUCC -----..(((((.......)))))(((..((((((((((...((((((.((((((((....))))).))).)))))))))))))))).(((((.(.((....)).).)))))..)))... ( -47.50) >consensus _____GUGCGUUUGUCUAUGACGUGCUAGGUUGGAGGAUGUGGAGUACUUCUUUCCGCACUCGGGACAGAUGUGCUCGUCCUCCAGCAGCGAAGUGCUGUUGAGGAUUUCGCCCUGCUCC .....(..((((.......))))..)...((((((((((...((((((.((((((((....))))).))).)))))))))))))))).(((((((.((....)).)))))))........ (-46.34 = -46.77 + 0.44)
Location | 568,585 – 568,705 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.42 |
Mean single sequence MFE | -46.80 |
Consensus MFE | -41.41 |
Energy contribution | -41.98 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.03 |
Mean z-score | -1.63 |
Structure conservation index | 0.88 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.632143 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 568585 120 - 23771897 UGGGACUCCAGGGGCACUCAUCGGUGCACCACCAUCAUGGGGAGCAGGGCGAAAUCCUCAACAGCACUUCGUUGCUGGAGGACGAGCACAUCUGUCCCGAGUGCGGAAAGAAAUACUCCA (((....)))...((((((...((((...))))......((((.((((((....(((((..(((((......))))))))))...))...))))))))))))))(((.........))). ( -42.40) >DroSec_CAF1 36 120 - 1 UGGGACUCCAGGGGCACUCAUCGGUGCACCACCAUCAUGGGGAGCAGGGCGAGAUCCUCAACAGCACUUCGCUGCUGGAGGACGAGCACAUCUGUCCCGAGUGCGGAAAGAAGUACUCCA .((((((((.((.(((((....))))).)).((.....))))))((((((..(.(((((..((((.....))))...))))))..))...))))))))((((((........)))))).. ( -48.20) >DroSim_CAF1 41 120 - 1 UGGGACUCCAGGGGCACUCAUCGGUGCACCACCAUCAUGGGGAGCAGGGCGAAAUCCUCAACAGCACUUCGCUGCUGGAGGACGAGCACAUCUGUCCCGAGUGCGGAAAGAAGUACUCCA .((((((((.((.(((((....))))).)).((.....))))))((((((....(((((..((((.....))))...)))))...))...))))))))((((((........)))))).. ( -46.80) >DroEre_CAF1 36 120 - 1 UGGGACUCCAGGGGCAUUCGUCGGCGCACCACCACCAUGCGGAGCCGGGCGAAAUCCUCAACAGCAGCUCGCUGCUGGAGGACGAGCACAUCUGUCCCGAGUGCGGAAAGAAGUACUCCA .(((((...(((.((.((((((.(.((.((.(......).)).))).)))))).(((((..((((((....)))))))))))...))...))))))))((((((........)))))).. ( -49.80) >consensus UGGGACUCCAGGGGCACUCAUCGGUGCACCACCAUCAUGGGGAGCAGGGCGAAAUCCUCAACAGCACUUCGCUGCUGGAGGACGAGCACAUCUGUCCCGAGUGCGGAAAGAAGUACUCCA .((((((((.((.(((((....))))).)).((.....))))).....((....(((((..(((((......))))))))))...))......)))))((((((........)))))).. (-41.41 = -41.98 + 0.56)
Location | 568,625 – 568,739 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.03 |
Mean single sequence MFE | -52.83 |
Consensus MFE | -42.33 |
Energy contribution | -43.70 |
Covariance contribution | 1.37 |
Combinations/Pair | 1.03 |
Mean z-score | -1.54 |
Structure conservation index | 0.80 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.587851 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 568625 114 + 23771897 CUCCAGCAACGAAGUGCUGUUGAGGAUUUCGCCCUGCUCCCCAUGAUGGUGGUGCACCGAUGAGUGCCCCUGGAGUCCCAGGUGGUCCUCCGAGGAUUGACGGCUGGAG------GUGGA (((((((..((((((.((....)).))))))...(((.((((.....)).)).)))((...(((..(((((((....))))).))..)))...)).......)))))))------..... ( -48.30) >DroSec_CAF1 76 114 + 1 CUCCAGCAGCGAAGUGCUGUUGAGGAUCUCGCCCUGCUCCCCAUGAUGGUGGUGCACCGAUGAGUGCCCCUGGAGUCCCAGGUGGUCCUCCGAAGAUUGACGGCUGGAG------GUGGA (((((((.((((..(.((....)).)..))))..(((.((((.....)).)).))).((..(((..(((((((....))))).))..)))))..........)))))))------..... ( -45.70) >DroSim_CAF1 81 114 + 1 CUCCAGCAGCGAAGUGCUGUUGAGGAUUUCGCCCUGCUCCCCAUGAUGGUGGUGCACCGAUGAGUGCCCCUGGAGUCCCAGGUGGUCCUCCGGGGAUUGACGGCUGGAG------GUGGA (((((((.(((((((.((....)).))))))).....(((((....(((((...)))))..(((..(((((((....))))).))..))).)))))......)))))))------..... ( -54.60) >DroEre_CAF1 76 120 + 1 CUCCAGCAGCGAGCUGCUGUUGAGGAUUUCGCCCGGCUCCGCAUGGUGGUGGUGCGCCGACGAAUGCCCCUGGAGUCCCAGGUGGUCCUCCGAGGACUGUCGGCUGGAGCUGGAGCUGGA .((((((.(((((.(.((....)).).)))))((((((((((((.......))))((((((.......(((((....))))).(((((.....))))))))))).)))))))).)))))) ( -62.70) >consensus CUCCAGCAGCGAAGUGCUGUUGAGGAUUUCGCCCUGCUCCCCAUGAUGGUGGUGCACCGAUGAGUGCCCCUGGAGUCCCAGGUGGUCCUCCGAGGAUUGACGGCUGGAG______GUGGA (((((((.(((((((.((....)).)))))))...((.((((.....)).)).)).((...(((.((((((((....))))).))).)))...)).......)))))))........... (-42.33 = -43.70 + 1.37)
Location | 568,625 – 568,739 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.03 |
Mean single sequence MFE | -49.75 |
Consensus MFE | -42.99 |
Energy contribution | -43.05 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.12 |
Mean z-score | -2.70 |
Structure conservation index | 0.86 |
SVM decision value | 2.01 |
SVM RNA-class probability | 0.985449 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 568625 114 - 23771897 UCCAC------CUCCAGCCGUCAAUCCUCGGAGGACCACCUGGGACUCCAGGGGCACUCAUCGGUGCACCACCAUCAUGGGGAGCAGGGCGAAAUCCUCAACAGCACUUCGUUGCUGGAG .....------(((((((((((..(((((((((..((....))..)))).((.(((((....))))).))........)))))....))))...........(((.....)))))))))) ( -45.10) >DroSec_CAF1 76 114 - 1 UCCAC------CUCCAGCCGUCAAUCUUCGGAGGACCACCUGGGACUCCAGGGGCACUCAUCGGUGCACCACCAUCAUGGGGAGCAGGGCGAGAUCCUCAACAGCACUUCGCUGCUGGAG .....------(((((((((((..(((((((((..((....))..)))).((.(((((....))))).))........)))))....))))...........(((.....)))))))))) ( -44.70) >DroSim_CAF1 81 114 - 1 UCCAC------CUCCAGCCGUCAAUCCCCGGAGGACCACCUGGGACUCCAGGGGCACUCAUCGGUGCACCACCAUCAUGGGGAGCAGGGCGAAAUCCUCAACAGCACUUCGCUGCUGGAG .....------(((((((((((..(((((((((..((....))..)))).((.(((((....))))).))........)))))....))))...........(((.....)))))))))) ( -50.50) >DroEre_CAF1 76 120 - 1 UCCAGCUCCAGCUCCAGCCGACAGUCCUCGGAGGACCACCUGGGACUCCAGGGGCAUUCGUCGGCGCACCACCACCAUGCGGAGCCGGGCGAAAUCCUCAACAGCAGCUCGCUGCUGGAG ....((.((.(((((.((((((.((((..((((..((....))..))))..))))....))))))(((.........)))))))).))))......(((..((((((....))))))))) ( -58.70) >consensus UCCAC______CUCCAGCCGUCAAUCCUCGGAGGACCACCUGGGACUCCAGGGGCACUCAUCGGUGCACCACCAUCAUGGGGAGCAGGGCGAAAUCCUCAACAGCACUUCGCUGCUGGAG ...........(((((((((((..(((((((((..((....))..)))).((.(((((....))))).))........)))))....))))...........(((.....)))))))))) (-42.99 = -43.05 + 0.06)
Location | 568,665 – 568,773 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.91 |
Mean single sequence MFE | -38.55 |
Consensus MFE | -33.96 |
Energy contribution | -33.65 |
Covariance contribution | -0.31 |
Combinations/Pair | 1.10 |
Mean z-score | -1.78 |
Structure conservation index | 0.88 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.874454 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 568665 108 - 23771897 CGACUCGAAUUCCUGCGCC------AGCAGCAGUUCCAGUUCCAC------CUCCAGCCGUCAAUCCUCGGAGGACCACCUGGGACUCCAGGGGCACUCAUCGGUGCACCACCAUCAUGG .((((.(((((.((((...------.)))).))))).))))....------......((((....((..((((..((....))..))))..))(((((....))))).........)))) ( -36.10) >DroSec_CAF1 116 108 - 1 CGACUCGAAUUCCUGCGCC------AGCAGCAGUUCCAGUUCCAC------CUCCAGCCGUCAAUCUUCGGAGGACCACCUGGGACUCCAGGGGCACUCAUCGGUGCACCACCAUCAUGG .((((.(((((.((((...------.)))).))))).))))....------..(((((((((..((....)).)))..(((((....)))))))).......((((...))))....))) ( -36.90) >DroSim_CAF1 121 108 - 1 CGACUCGAAUUCCUGCGCC------AGCAGCAGUUCCAGUUCCAC------CUCCAGCCGUCAAUCCCCGGAGGACCACCUGGGACUCCAGGGGCACUCAUCGGUGCACCACCAUCAUGG .((((.(((((.((((...------.)))).))))).))))....------......((((....(((.((((..((....))..)))).)))(((((....))))).........)))) ( -37.90) >DroEre_CAF1 116 120 - 1 CGACUCGAAUUCCUGCACCAGCACCAGCAGCAGUUCCAGUUCCAGCUCCAGCUCCAGCCGACAGUCCUCGGAGGACCACCUGGGACUCCAGGGGCAUUCGUCGGCGCACCACCACCAUGC .((((.(((((.((((..........)))).))))).))))..(((....)))...((((((.((((..((((..((....))..))))..))))....))))))............... ( -43.30) >consensus CGACUCGAAUUCCUGCGCC______AGCAGCAGUUCCAGUUCCAC______CUCCAGCCGUCAAUCCUCGGAGGACCACCUGGGACUCCAGGGGCACUCAUCGGUGCACCACCAUCAUGG .((((.(((((.((((..........)))).))))).))))(((............((((.....((((((((..((....))..)))).)))).......))))............))) (-33.96 = -33.65 + -0.31)
Location | 568,705 – 568,813 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.77 |
Mean single sequence MFE | -40.64 |
Consensus MFE | -35.69 |
Energy contribution | -36.00 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.03 |
Mean z-score | -3.31 |
Structure conservation index | 0.88 |
SVM decision value | 2.60 |
SVM RNA-class probability | 0.995623 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 568705 108 - 23771897 AGGUCUUCGAUCGCAGGAAACUGCGUCGUUGCACAAUCUCCGACUCGAAUUCCUGCGCC------AGCAGCAGUUCCAGUUCCAC------CUCCAGCCGUCAAUCCUCGGAGGACCACC .(((((((((.(((((....)))))))((((..........((((.(((((.((((...------.)))).))))).))))....------...))))............)))))))... ( -38.53) >DroSec_CAF1 156 108 - 1 AGGUCUUCGACCGCAGGAAACUGCGUCGAUGCACAAUCUCCGACUCGAAUUCCUGCGCC------AGCAGCAGUUCCAGUUCCAC------CUCCAGCCGUCAAUCUUCGGAGGACCACC .((((((((((.((((....)))))))(((((.........((((.(((((.((((...------.)))).))))).))))....------.....).))))........)))))))... ( -40.47) >DroSim_CAF1 161 108 - 1 AGGUCUUCGACCGCAGGAAACUGCGUCGAUGCACAAUCUCCGACUCGAAUUCCUGCGCC------AGCAGCAGUUCCAGUUCCAC------CUCCAGCCGUCAAUCCCCGGAGGACCACC .((((((((((.((((....)))))))(((((.........((((.(((((.((((...------.)))).))))).))))....------.....).))))........)))))))... ( -40.47) >DroEre_CAF1 156 120 - 1 AGGUGUUUGAUCGCAGGAAACUGCGUCGAUGCACCAUCUCCGACUCGAAUUCCUGCACCAGCACCAGCAGCAGUUCCAGUUCCAGCUCCAGCUCCAGCCGACAGUCCUCGGAGGACCACC .(((((((((.(((((....))))))))).))))).(((((((...(((((.((((..........)))).)))))..(((..(((....)))..))).........)))))))...... ( -43.10) >consensus AGGUCUUCGACCGCAGGAAACUGCGUCGAUGCACAAUCUCCGACUCGAAUUCCUGCGCC______AGCAGCAGUUCCAGUUCCAC______CUCCAGCCGUCAAUCCUCGGAGGACCACC .((((.((((.(((((....)))))))))........((((((((.(((((.((((..........)))).))))).))))..................(........)))))))))... (-35.69 = -36.00 + 0.31)
Location | 568,739 – 568,853 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.30 |
Mean single sequence MFE | -46.07 |
Consensus MFE | -39.21 |
Energy contribution | -39.78 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.02 |
Mean z-score | -1.98 |
Structure conservation index | 0.85 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.823144 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 568739 114 + 23771897 ACUGGAACUGCUGCU------GGCGCAGGAAUUCGAGUCGGAGAUUGUGCAACGACGCAGUUUCCUGCGAUCGAAGACCUUGUGGCUGUAGUAGUUGGAGUCGUCGUCCGAGGAGGCGUA (((..(((((((((.------(.((((((..(((((((.((((((((((......)))))))))).))..)))))...)))))).).)))))))))..)))((((.((....)))))).. ( -47.80) >DroSec_CAF1 190 114 + 1 ACUGGAACUGCUGCU------GGCGCAGGAAUUCGAGUCGGAGAUUGUGCAUCGACGCAGUUUCCUGCGGUCGAAGACCUUGUGGCUGUAGUAGUUGGAGUCGUCGUCCGAGGAGGCGUA (((..(((((((((.------(.((((((..(((((((.((((((((((......)))))))))).))..)))))...)))))).).)))))))))..)))((((.((....)))))).. ( -47.80) >DroSim_CAF1 195 114 + 1 ACUGGAACUGCUGCU------GGCGCAGGAAUUCGAGUCGGAGAUUGUGCAUCGACGCAGUUUCCUGCGGUCGAAGACCUUGUGGCUGUAGUAGUUGGAGUCGUCGUCCGAGGAGGCGUA (((..(((((((((.------(.((((((..(((((((.((((((((((......)))))))))).))..)))))...)))))).).)))))))))..)))((((.((....)))))).. ( -47.80) >DroEre_CAF1 196 120 + 1 ACUGGAACUGCUGCUGGUGCUGGUGCAGGAAUUCGAGUCGGAGAUGGUGCAUCGACGCAGUUUCCUGCGAUCAAACACCUUGUGGCUGUAAUAGUUGGAGUCGUCGUCCGAGGAGGCGUA ((((..((.((..(.((((.(((((((((((.....((((..(......)..)))).....))))))).))))..))))..)..)).))..))))......((((.((....)))))).. ( -40.90) >consensus ACUGGAACUGCUGCU______GGCGCAGGAAUUCGAGUCGGAGAUUGUGCAUCGACGCAGUUUCCUGCGAUCGAAGACCUUGUGGCUGUAGUAGUUGGAGUCGUCGUCCGAGGAGGCGUA (((..(((((((((.......(.((((((..(((((((.((((((((((......)))))))))).))..)))))...)))))).).)))))))))..)))((((.((....)))))).. (-39.21 = -39.78 + 0.56)
Location | 568,739 – 568,853 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.30 |
Mean single sequence MFE | -35.38 |
Consensus MFE | -32.49 |
Energy contribution | -32.55 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.03 |
Mean z-score | -2.32 |
Structure conservation index | 0.92 |
SVM decision value | 1.70 |
SVM RNA-class probability | 0.972878 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 568739 114 - 23771897 UACGCCUCCUCGGACGACGACUCCAACUACUACAGCCACAAGGUCUUCGAUCGCAGGAAACUGCGUCGUUGCACAAUCUCCGACUCGAAUUCCUGCGCC------AGCAGCAGUUCCAGU .........((((((((((((.............(((....)))........((((....))))))))))).......)))))((.(((((.((((...------.)))).))))).)). ( -35.81) >DroSec_CAF1 190 114 - 1 UACGCCUCCUCGGACGACGACUCCAACUACUACAGCCACAAGGUCUUCGACCGCAGGAAACUGCGUCGAUGCACAAUCUCCGACUCGAAUUCCUGCGCC------AGCAGCAGUUCCAGU .........(((((.(((.......................((((...))))((((....)))))))(((.....))))))))((.(((((.((((...------.)))).))))).)). ( -34.90) >DroSim_CAF1 195 114 - 1 UACGCCUCCUCGGACGACGACUCCAACUACUACAGCCACAAGGUCUUCGACCGCAGGAAACUGCGUCGAUGCACAAUCUCCGACUCGAAUUCCUGCGCC------AGCAGCAGUUCCAGU .........(((((.(((.......................((((...))))((((....)))))))(((.....))))))))((.(((((.((((...------.)))).))))).)). ( -34.90) >DroEre_CAF1 196 120 - 1 UACGCCUCCUCGGACGACGACUCCAACUAUUACAGCCACAAGGUGUUUGAUCGCAGGAAACUGCGUCGAUGCACCAUCUCCGACUCGAAUUCCUGCACCAGCACCAGCAGCAGUUCCAGU .........(((((.((.(....).................(((((((((.(((((....))))))))).))))).)))))))((.(((((.((((..........)))).))))).)). ( -35.90) >consensus UACGCCUCCUCGGACGACGACUCCAACUACUACAGCCACAAGGUCUUCGACCGCAGGAAACUGCGUCGAUGCACAAUCUCCGACUCGAAUUCCUGCGCC______AGCAGCAGUUCCAGU .........(((((.((.................(((....)))..((((.(((((....))))))))).......)))))))((.(((((.((((..........)))).))))).)). (-32.49 = -32.55 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:48 2006