Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,516,408 – 5,516,498 |
Length | 90 |
Max. P | 0.899852 |
Location | 5,516,408 – 5,516,498 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 94.37 |
Mean single sequence MFE | -20.00 |
Consensus MFE | -17.31 |
Energy contribution | -17.67 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.06 |
Mean z-score | -1.90 |
Structure conservation index | 0.87 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.899852 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5516408 90 - 23771897 UACACGAGCACCUACACGCACACAGAGACCGGUUUUCCUGGGGCCAUUCCAUACACUCCAGGUUAGCCCUCCAACGAUUUCUCUACUCAU .....((((........))....(((((..((((..(((((((............)))))))..)))).((....))..)))))..)).. ( -20.40) >DroSec_CAF1 78127 90 - 1 UACACGAGCACCUACACGCACACAGAGACCGGUUUUCCUGGGGCCAUUCCAUACACUCCAGGUUAGCCCUCCAACGAUUUCUCUACACAU .......((........))....(((((..((((..(((((((............)))))))..)))).((....))..)))))...... ( -20.20) >DroSim_CAF1 79629 90 - 1 UACACGAGCACCUACACGCACACAGAGACCGGUUUUCCUGGGGCCAUUCCAUACACUCCAGGUUAGCCCUCCAACGAUUUCUCUACACAU .......((........))....(((((..((((..(((((((............)))))))..)))).((....))..)))))...... ( -20.20) >DroEre_CAF1 79001 90 - 1 UACACGAGCACCUACACGCACACAGAGACCGGUUUUCCUGGGGCCAUUCCAUACACUCCAGGUUAGCCCUCCAACGAUUUCUCUACUCAU .....((((........))....(((((..((((..(((((((............)))))))..)))).((....))..)))))..)).. ( -20.40) >DroYak_CAF1 67106 90 - 1 UACACGAGCACCUACACGCACACAGAGACCGGUUUUCCUGGGGCCAUUCCAUACACUCCAGGUUAGCCCUCCAACGAUUUCUCUACUCAU .....((((........))....(((((..((((..(((((((............)))))))..)))).((....))..)))))..)).. ( -20.40) >DroAna_CAF1 40390 89 - 1 UACACGAGCACCUACACGUACACCGAGACCGGUUUUCCUGGGGCCAUCGCCUAUCAAGCAGGUUAGCCCUCCACCGAUUU-UCUACGCUU .....((((.....((.(...((((....))))...).))((((....((((.......))))..))))...........-.....)))) ( -18.40) >consensus UACACGAGCACCUACACGCACACAGAGACCGGUUUUCCUGGGGCCAUUCCAUACACUCCAGGUUAGCCCUCCAACGAUUUCUCUACUCAU ....((.((........)).....(((...((((..(((((((............)))))))..)))))))...)).............. (-17.31 = -17.67 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:18 2006