Locus 2004

Sequence ID 3L_DroMel_CAF1
Location 5,504,569 – 5,504,659
Length 90
Max. P 0.982757
window3137

overview

Window 7

Location 5,504,569 – 5,504,659
Length 90
Sequences 4
Columns 91
Reading direction reverse
Mean pairwise identity 92.66
Mean single sequence MFE -21.18
Consensus MFE -20.09
Energy contribution -19.90
Covariance contribution -0.19
Combinations/Pair 1.17
Mean z-score -2.18
Structure conservation index 0.95
SVM decision value 1.92
SVM RNA-class probability 0.982757
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5504569 90 - 23771897
GAAAGCCGAUUAAAUUGAUUACAACAUGCUGGCGAAUUUAAUCUGGUUGUGAGCUGCAAAAGCAGUUUAUG-AUAAAACAGAAUUUAUAAA
...((((((((((((((....((......)).).))))))))).))))(((((((((....))))))))).-................... ( -20.10)
>DroSim_CAF1 68169 90 - 1
GAAAGCCGAUUAAAUUGAUUACAGCAUGCUGGCGAAUUUAAUCUGGUUGUGAGCUGCAAAAGCAGUUUAAG-GUAAAACAGAAUUUAUAAA
...((((((((((((((....(((....))).).))))))))).)))).((((((((....))))))))..-................... ( -22.60)
>DroEre_CAF1 64608 91 - 1
GAAAGCCGAUUAAGUUGAUUACAGCAUGCUGGCGAAUUUAAUCUGGUUGUGAACUGCAAAAGCGGUUUAAGGGUAAAACAGAGUUUACACU
...((((((((((((((....(((....))).).))))))))).)))).((((((((....))))))))...(((((......)))))... ( -23.80)
>DroYak_CAF1 54841 91 - 1
GAAAGCCGAUUAAAUUGAUUACAGCAUGCUGGCGAAUUUAAUCUGGUUGCGAACUGCAAAAGCUGUUUAAGGGUAAAACAGAAUUUAUAAA
...((((((((((((((....(((....))).).))))))))).))))((.....))(((..((((((.......))))))..)))..... ( -18.20)
>consensus
GAAAGCCGAUUAAAUUGAUUACAGCAUGCUGGCGAAUUUAAUCUGGUUGUGAACUGCAAAAGCAGUUUAAG_GUAAAACAGAAUUUAUAAA
...((((((((((((((....(((....))).).))))))))).)))).((((((((....))))))))...(((((......)))))... (-20.09 = -19.90 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:15 2006