Locus 2003

Sequence ID 3L_DroMel_CAF1
Location 5,501,529 – 5,501,637
Length 108
Max. P 0.500000
window3136

overview

Window 6

Location 5,501,529 – 5,501,637
Length 108
Sequences 3
Columns 108
Reading direction forward
Mean pairwise identity 82.86
Mean single sequence MFE -19.03
Consensus MFE -16.90
Energy contribution -16.47
Covariance contribution -0.44
Combinations/Pair 1.19
Mean z-score -0.86
Structure conservation index 0.89
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5501529 108 + 23771897
AUGCUAUGCGAUAUCCGGACAAGCUGUGCGGGCAAGGAUAGCAGAAGCCAACCUGAGAUAAAUACAUUUAAUCUCACACUUUAGCCACAACAACAACAACAACAAGAG
.((((((.(....((((.((.....)).))))...).))))))..........((((((.((.....)).))))))................................ ( -20.80)
>DroEre_CAF1 61657 98 + 1
AUGUUAUGCGAUACCCAGACAAGCUGUGUGGGCAAGGAUAGCAGUAAUCAACCUGGGAUAAAUUCAUUUAAUCUCACACCUUAACCGCCACAAAAACG----------
.((((((.(....((((.((.....)).))))...).))))))..........((((((.((.....)).))))))......................---------- ( -19.10)
>DroYak_CAF1 51793 99 + 1
AUGUUACGCGAUAUCCAGACAAGCUGUGUGCGCAAGGAUAGCAGAAACCAACCUGAGAUAAAUACAUUUAAUCUCACACUUUAACCGCAACAACAACAA---------
.((((..(((.............((((((.(....).))).))).........((((((.((.....)).)))))).........)))...))))....--------- ( -17.20)
>consensus
AUGUUAUGCGAUAUCCAGACAAGCUGUGUGGGCAAGGAUAGCAGAAACCAACCUGAGAUAAAUACAUUUAAUCUCACACUUUAACCGCAACAACAACAA_________
.((((((.(....((((.((.....)).))))...).))))))..........((((((.((.....)).))))))................................ (-16.90 = -16.47 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:14 2006