| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,486,962 – 5,487,061 |
| Length | 99 |
| Max. P | 0.539994 |
| Location | 5,486,962 – 5,487,061 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 91.30 |
| Mean single sequence MFE | -21.50 |
| Consensus MFE | -20.08 |
| Energy contribution | -19.53 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.539994 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5486962 99 - 23771897 UGUGUAUUCCAGUAAAUUGGCUGUCAUAGCUCAUUCAUUUAACGUAUGUGUGUUAAUGUUUUAGUGAAUGACUAU-UAUUAGGGUAUAGCUACUACACUA .(((((...((((......))))...(((((((((((((.(((((..........)))))..)))))))))(((.-...)))......)))).))))).. ( -22.30) >DroSec_CAF1 48451 100 - 1 UGUGUAUUCCAGCAAAUAAGCUGUCGUAGCUCAUUCAUUUAACGUAUGUGUGUAAAUGUUUUAGUGAAUGACUAUUUAUUAAGGUACAGCUAAUAGACUA ..((((((.((((......))))..((((.(((((((((.(((((.((....)).)))))..))))))))))))).......))))))............ ( -21.30) >DroSim_CAF1 50607 99 - 1 UGUGUAUUCCAGUAAAUAAGCUGUCAUGGCUCAUUCAUUUAGCGUAUGUGUGUAAAUGUUUUAGUGAAUGACUAU-UAUUAAUGUACAGCUACUACACUA .((((.....(((.....(((((((((((.(((((((((.(((((.((....)).)))))..)))))))))))..-.....))).))))))))))))).. ( -20.91) >consensus UGUGUAUUCCAGUAAAUAAGCUGUCAUAGCUCAUUCAUUUAACGUAUGUGUGUAAAUGUUUUAGUGAAUGACUAU_UAUUAAGGUACAGCUACUACACUA .(((((...((((......))))..((((.(((((((((.(((((..........)))))..)))))))))))))..................))))).. (-20.08 = -19.53 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:13 2006