| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,482,037 – 5,482,185 |
| Length | 148 |
| Max. P | 0.661053 |
| Location | 5,482,037 – 5,482,145 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 87.41 |
| Mean single sequence MFE | -29.84 |
| Consensus MFE | -20.82 |
| Energy contribution | -20.46 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.611295 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5482037 108 + 23771897 UUUAUUUCCACUAAUGGAAGUGCAACCAAUGCCAGU--CAUGAUGGGUGGGUGGAAUAUAAA-----GUCGGUGGAAGCCUUUAAUAGGCUUUUAAAUUAUAUGCAUGGAAUCGG .....(((((....)))))((((..(((...(((.(--(.....)).))).))).((((((.-----.....(((((((((.....)))))))))..))))))))))........ ( -27.80) >DroSec_CAF1 43564 103 + 1 -----UUCCCCUAAUGGAAGUGCAACCAAUGCCAGU--CAUGAUGGGUGGGUGGAAUAUAAA-----GUCGGUGGAAGCCUUUAAUAGGCUUUUAAAUUAUAUGCAUGGAAUCGG -----((((((....))..((((..(((...(((.(--(.....)).))).))).((((((.-----.....(((((((((.....)))))))))..)))))))))))))).... ( -28.10) >DroSim_CAF1 45713 108 + 1 UUUAUUUCCACUAAUGGAAGUGCAACCAAUGCCAGU--CAUGAUGGGUGGGUGGAAUAUAAA-----GUCGGUGGAAGCCUUUAAUAGGCUUUUAAAUUAUAUGCAUGGAAUCGG .....(((((....)))))((((..(((...(((.(--(.....)).))).))).((((((.-----.....(((((((((.....)))))))))..))))))))))........ ( -27.80) >DroEre_CAF1 42851 104 + 1 UUUAUUUCCACUAAUGGAAGUGCGGCCACUGCCAAA--CAUG----GUGGGUGGAAUAUAAA-----GUCGGUGGAAGCCUUUAAUAGGCUUUUAAAUGAUAUGCAUGGAAUCGG .....(((((....)))))(((((.((((..(((..--..))----)..).)))........-----((((.(((((((((.....)))))))))..)))).)))))........ ( -30.40) >DroYak_CAF1 31814 111 + 1 UUUAUUUCCACUAAUGGAAGUGCGGCCAAUGAUGGGUGGGUG----GUGGUUGGAAUAUAAACCAUCAUCGGUGGAAGCCUUUAAUAGGCUUUUAAAUUAUAUGCAUGGAAUCGU ...(((((((....)))))))(((.(((....((.(((((((----((((((........))))))))))..(((((((((.....))))))))).....))).)))))...))) ( -35.10) >consensus UUUAUUUCCACUAAUGGAAGUGCAACCAAUGCCAGU__CAUGAUGGGUGGGUGGAAUAUAAA_____GUCGGUGGAAGCCUUUAAUAGGCUUUUAAAUUAUAUGCAUGGAAUCGG .....((((......))))(((((.(((...(((.............))).)))..................(((((((((.....))))))))).......)))))........ (-20.82 = -20.46 + -0.36)
| Location | 5,482,073 – 5,482,185 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 88.87 |
| Mean single sequence MFE | -29.03 |
| Consensus MFE | -21.15 |
| Energy contribution | -21.40 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.661053 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5482073 112 + 23771897 CAUGAUGGGUGGGUGGAAUAUAAA-----GUCGGUGGAAGCCUUUAAUAGGCUUUUAAAUUAUAUGCAUGGAAUCGGUAUUGAAUGCCAGCGUAUUGAUUGCUGAUACAUUGAUUGG ...(((.((((.(((..((((((.-----.....(((((((((.....)))))))))..)))))).)))...(((((((.(.(((((....))))).).))))))).)))).))).. ( -28.80) >DroSec_CAF1 43595 112 + 1 CAUGAUGGGUGGGUGGAAUAUAAA-----GUCGGUGGAAGCCUUUAAUAGGCUUUUAAAUUAUAUGCAUGGAAUCGGUAUUGAAUGGCAGCGUACUGAUUGCUGAUACAUUGGUUGG ...(((.((((.(((..((((((.-----.....(((((((((.....)))))))))..)))))).)))(.(((((((((((.....))..))))))))).).....)))).))).. ( -27.10) >DroEre_CAF1 42887 108 + 1 CAUG----GUGGGUGGAAUAUAAA-----GUCGGUGGAAGCCUUUAAUAGGCUUUUAAAUGAUAUGCAUGGAAUCGGUAUUGAAUGCCGACGUAUUGAUUGCUGAUACAUUGGUGGG (((.----(((.............-----((((.(((((((((.....)))))))))..)))).........(((((((.(.(((((....))))).).))))))).)).).))).. ( -25.40) >DroYak_CAF1 31852 113 + 1 GGUG----GUGGUUGGAAUAUAAACCAUCAUCGGUGGAAGCCUUUAAUAGGCUUUUAAAUUAUAUGCAUGGAAUCGUUAUUGAAUGCCAGCGUAUUAAUUGCUGAUACUUUCGUUGG ((((----((((((........))))))))))..(((((((((.....)))))))))((((((((((.(((..(((....)))...)))))))).)))))................. ( -34.80) >consensus CAUG____GUGGGUGGAAUAUAAA_____GUCGGUGGAAGCCUUUAAUAGGCUUUUAAAUUAUAUGCAUGGAAUCGGUAUUGAAUGCCAGCGUAUUGAUUGCUGAUACAUUGGUUGG .............................((((((((((((((.....)))))))).((((((((((.(((..(((....)))...)))))))).)))))))))))........... (-21.15 = -21.40 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:12 2006