Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,480,140 – 5,480,260 |
Length | 120 |
Max. P | 0.681294 |
Location | 5,480,140 – 5,480,260 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.89 |
Mean single sequence MFE | -34.57 |
Consensus MFE | -30.99 |
Energy contribution | -31.18 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.03 |
Mean z-score | -1.25 |
Structure conservation index | 0.90 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.681294 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5480140 120 - 23771897 GCCAUUAAUUCUUAUUUAUUCGCAGUAAUGUCAACGUACAAGGAUCCAUUUCCCGGCUGGACUGAUAAUUUGUACGGGCCAUCAGGUUUAUGCACUUGGUCCGCCCGGGGACUCGUCCGU .....................(((....)))..........((((....(((((((.(((((..(.....((((..((((....))))..)))).)..))))).)))))))...)))).. ( -35.90) >DroVir_CAF1 23850 120 - 1 GCCAUUAAUUCUUAUUUAUUUGCAGUAAUGUCAACGUACAAGGAUCCAUUUCCCGGCUGGACUGAUAAUUUGUACGGGCCAUCAGGUUUAUGCACUUGGUCAGCCCGGGGACUCGUACGU .....................(((....)))..((((((..(....)..((((((((((.((..(.....((((..((((....))))..)))).)..))))).)))))))...)))))) ( -34.20) >DroGri_CAF1 2351 120 - 1 ACCAUUAAUUCUUAUUUAUUUGCAGUAAUGUCAACGUACAAGGAUCCAUUUCCCGGCUGGACUGAUAAUUUGUACGGGCCAUCAGGUUUAUGCACUUGGUCAGCUCGGGGACUCGUACGU .....................(((....)))..((((((..(....)..((((((((((.((..(.....((((..((((....))))..)))).)..)))))).))))))...)))))) ( -34.20) >DroWil_CAF1 5760 120 - 1 ACCAUUAAUUCUUAUUUAUUUGCAGUAAUGUCAACGUACAAGGAUCCAUUUCCCGGCUGGACUGAUAAUUUGUACGGGCCAUCAGGUUUAUGCACUUGGUCGGCCCGGGGACUCGUACGU ........................(((..(((..((((((((((......)))(((.....))).....))))))((((((((((((......))))))).))))))..)))...))).. ( -35.40) >DroMoj_CAF1 35420 120 - 1 GCCAUUAAUUCUUAUUUAUUUGCAGUAAUGUCAACGUACAAGGAUCCAUUUCCCGGCUGGACUGAUAAUUUGUACGGGCCAUCAGGUUUAUGCACUUGGUCAGCCCGGGGACUCGUACGU .....................(((....)))..((((((..(....)..((((((((((.((..(.....((((..((((....))))..)))).)..))))).)))))))...)))))) ( -34.20) >DroPer_CAF1 3486 120 - 1 GCCAUUAAUUCUUAUUUAUUUGCAGUAAUGUCAACGUACAAGGAUCCAUUUCCCGGCUGGACUGAUAAUUUGUACGGGCCAUCAGGUUUAUGCACUUGGUCUGCCCGGGGACUCGUCCGU ...................(((((....)).))).......((((....(((((((..((((..(.....((((..((((....))))..)))).)..))))..)))))))...)))).. ( -33.50) >consensus GCCAUUAAUUCUUAUUUAUUUGCAGUAAUGUCAACGUACAAGGAUCCAUUUCCCGGCUGGACUGAUAAUUUGUACGGGCCAUCAGGUUUAUGCACUUGGUCAGCCCGGGGACUCGUACGU .....................(((....)))..((((((..(....)..(((((((...(((..(.....((((..((((....))))..)))).)..)))...)))))))...)))))) (-30.99 = -31.18 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:10 2006