Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 68,026 – 68,117 |
Length | 91 |
Max. P | 0.860755 |
Location | 68,026 – 68,117 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 81.23 |
Mean single sequence MFE | -27.81 |
Consensus MFE | -19.37 |
Energy contribution | -19.82 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.03 |
Mean z-score | -2.07 |
Structure conservation index | 0.70 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.860755 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 68026 91 + 23771897 AAAGUAAGUCUUUGUGCGAGAGCU----CCAUUUGGCUUAAGUUUAGCCAAAUACAUAAAUAUGUAUUUGCCGAACAGAUCUUAAAUCUUCGGUG------------------------ .(((((.((.(((((((....)).----..((((((((.......))))))))..))))).)).)))))(((((..((((.....))))))))).------------------------ ( -22.60) >DroSec_CAF1 17511 119 + 1 AAAGUAAGUCUUUGUGAGAGAGAUCGAACCAUUUGGCUUAAGUUUAGCCAAAUAUAUAAAUAUUUAUUUGCCGAACAGAUCUUAAACCUUCGGUGACUCUCAACUUGGACCCCGGCAGA ...((..((((..(((((((..........((((((((.......))))))))..............(..(((((.............)))))..)))))).))..))))....))... ( -30.42) >DroSim_CAF1 18050 119 + 1 AAAGUAAGUCUUUGUGAGAGAGAUCGAUCCAUUUGGCUUAAGUUUAGCCAAAUAUAUAAAUAUUUAUUUGCCGAACAGAUCUUAAACCUUCGGUGACUCUCAACUUGGACCCCGGCAGA ...((..((((..(((((((..........((((((((.......))))))))..............(..(((((.............)))))..)))))).))..))))....))... ( -30.42) >consensus AAAGUAAGUCUUUGUGAGAGAGAUCGA_CCAUUUGGCUUAAGUUUAGCCAAAUAUAUAAAUAUUUAUUUGCCGAACAGAUCUUAAACCUUCGGUGACUCUCAACUUGGACCCCGGCAGA .((((((((.((((((.((....)).....((((((((.......)))))))).)))))).))))))))((((((.............))))))......................... (-19.37 = -19.82 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:02 2006