Locus 20

Sequence ID 3L_DroMel_CAF1
Location 68,026 – 68,117
Length 91
Max. P 0.860755
window24

overview

Window 4

Location 68,026 – 68,117
Length 91
Sequences 3
Columns 119
Reading direction forward
Mean pairwise identity 81.23
Mean single sequence MFE -27.81
Consensus MFE -19.37
Energy contribution -19.82
Covariance contribution 0.45
Combinations/Pair 1.03
Mean z-score -2.07
Structure conservation index 0.70
SVM decision value 0.83
SVM RNA-class probability 0.860755
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 68026 91 + 23771897
AAAGUAAGUCUUUGUGCGAGAGCU----CCAUUUGGCUUAAGUUUAGCCAAAUACAUAAAUAUGUAUUUGCCGAACAGAUCUUAAAUCUUCGGUG------------------------
.(((((.((.(((((((....)).----..((((((((.......))))))))..))))).)).)))))(((((..((((.....))))))))).------------------------ ( -22.60)
>DroSec_CAF1 17511 119 + 1
AAAGUAAGUCUUUGUGAGAGAGAUCGAACCAUUUGGCUUAAGUUUAGCCAAAUAUAUAAAUAUUUAUUUGCCGAACAGAUCUUAAACCUUCGGUGACUCUCAACUUGGACCCCGGCAGA
...((..((((..(((((((..........((((((((.......))))))))..............(..(((((.............)))))..)))))).))..))))....))... ( -30.42)
>DroSim_CAF1 18050 119 + 1
AAAGUAAGUCUUUGUGAGAGAGAUCGAUCCAUUUGGCUUAAGUUUAGCCAAAUAUAUAAAUAUUUAUUUGCCGAACAGAUCUUAAACCUUCGGUGACUCUCAACUUGGACCCCGGCAGA
...((..((((..(((((((..........((((((((.......))))))))..............(..(((((.............)))))..)))))).))..))))....))... ( -30.42)
>consensus
AAAGUAAGUCUUUGUGAGAGAGAUCGA_CCAUUUGGCUUAAGUUUAGCCAAAUAUAUAAAUAUUUAUUUGCCGAACAGAUCUUAAACCUUCGGUGACUCUCAACUUGGACCCCGGCAGA
.((((((((.((((((.((....)).....((((((((.......)))))))).)))))).))))))))((((((.............))))))......................... (-19.37 = -19.82 +   0.45) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:02 2006