Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,622 – 21,722 |
Length | 100 |
Max. P | 0.689393 |
Location | 21,622 – 21,722 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 92.81 |
Mean single sequence MFE | -21.91 |
Consensus MFE | -20.78 |
Energy contribution | -21.44 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.61 |
Structure conservation index | 0.95 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.689393 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21622 100 + 23771897 UGUUAUCGCUCUGUUUACACGCAUCCAAAAAAGUAAUG--AACUAUAGUAAACCCAAACAAAAGCCGGGCAAUGCAAUGCGUGUGAUUCAAAAACAGGGAAG ........((((((((((((((((.......(((....--.)))...(((..(((...........)))...))).)))))))))).......))))))... ( -22.41) >DroSec_CAF1 11789 102 + 1 UGUUAUCGCUCUGUUUACAAGCAUCCCAAAAAGUAAUGUAUACUAGAGUAAACCCAAACAAAUGGCGGGCAAUGCAAUGCGUGUGAUACAAAAACAGGGAAA ........((((((((....(((((((..........((.(((....))).))(((......))).)))..)))).....(((...)))..))))))))... ( -19.10) >DroSim_CAF1 13317 102 + 1 UGUUAUCGCUCUGUUUACACGCAUCCCAAAAAGUAAUUUAUACUAGAGUAAACCCAAACAAAUGGCGGGCAAUGCAAUGCGUGUGAUACAAAAACAGGGAAA ........(((((((((((((((((((....((((.....)))).........(((......))).))).......)))))))))).......))))))... ( -24.22) >consensus UGUUAUCGCUCUGUUUACACGCAUCCCAAAAAGUAAUGUAUACUAGAGUAAACCCAAACAAAUGGCGGGCAAUGCAAUGCGUGUGAUACAAAAACAGGGAAA ........((((((((((((((((.......((((.....))))...(((..(((...........)))...))).)))))))))).......))))))... (-20.78 = -21.44 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:38 2006