Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,475,172 – 5,475,291 |
Length | 119 |
Max. P | 0.650647 |
Location | 5,475,172 – 5,475,291 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 83.82 |
Mean single sequence MFE | -35.52 |
Consensus MFE | -29.86 |
Energy contribution | -30.50 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.11 |
Mean z-score | -1.59 |
Structure conservation index | 0.84 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.650647 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5475172 119 + 23771897 UAUUAAAUCAAAUAAUUGAUAAUGUUUGUAGAAUUUCCGCUCAGUGUCCCUGUGCUGCAAGUGUGAGUGUCCUGCCUCUGUCUGAGGUUGGACUUUGACAAGAGGACAUUAGGCUGGGU ......(((((....)))))...............(((((..((((((((((.....)...(((.((.((((.(((((.....))))).)))).)).))))).)))))))..)).))). ( -35.50) >DroSec_CAF1 36669 119 + 1 UAUUUUUUUAAAUAAGUGAUAAUGCUUGUAGGUUUUCCGCUCAGUGUCCUUAUUCUGCAAGUGUGAGUGUCCUGCCUUUGUCUGAGGUUGGACUUUGACAAGAGGACAUUAGGCUGGGU ...........((((((......))))))......(((((..(((((((((..........(((.((.((((.(((((.....))))).)))).)).))).)))))))))..)).))). ( -36.40) >DroSim_CAF1 38349 119 + 1 UAUUUUAUCAAAUAAUUGAUAAUGCUUGUAGGUUUUCCGCUCAGUGUCCUUAUUCUGCAAGUGUGAGUGUCCUGCCUCUGUCUGAGGUUGGACUUUGACAAGAGGACAUUAGGCUGGGU ....(((((((....))))))).............(((((..(((((((((..........(((.((.((((.(((((.....))))).)))).)).))).)))))))))..)).))). ( -38.70) >DroEre_CAF1 36174 116 + 1 UACUGAAUUAUCUAUC---UAGUGUUUGGGGAAUUUCCGCUCAGUGUCUUGGUGCUGCGAGUGCGAGUGUCCUGCCUCUGUCUGAGGUCGGACUUUGACAAGAGGACAUUAGGCUGGGC ..........((((((---((((((...((((..((((((((((..(....)..))..))))).)))..)))).((((((((.(((......))).))).))))))))))))).)))). ( -38.00) >DroYak_CAF1 24525 115 + 1 UAUAAUAUGAGUUAUC---UAAUUUUUGUAGCAUUUCCGCUCAGUGUCUUUGUGCAGCGAGUGUGAG-GCAGGACCUCUGUCUGAGGUUGGACUUUGACAAGAGGACAUUAGGCUGGGU ..........(((((.---........)))))...(((((..((((((.((.(((.((....))...-))).)).(((((((.(((......))).))).))))))))))..)).))). ( -29.00) >consensus UAUUAUAUCAAAUAACUGAUAAUGUUUGUAGAAUUUCCGCUCAGUGUCCUUGUGCUGCAAGUGUGAGUGUCCUGCCUCUGUCUGAGGUUGGACUUUGACAAGAGGACAUUAGGCUGGGU ...................................(((((..(((((((((..........(((.((.((((.(((((.....))))).)))).)).))).)))))))))..)).))). (-29.86 = -30.50 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:05 2006