Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,468,815 – 5,468,916 |
Length | 101 |
Max. P | 0.878646 |
Location | 5,468,815 – 5,468,916 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 78.79 |
Mean single sequence MFE | -27.17 |
Consensus MFE | -20.29 |
Energy contribution | -19.97 |
Covariance contribution | -0.31 |
Combinations/Pair | 1.18 |
Mean z-score | -1.84 |
Structure conservation index | 0.75 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.878646 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5468815 101 + 23771897 --CAU-----UUUUAUUAACCAACACUAUGAGCCAGUAAAGGACCCUGGUUGUC-------CACCAGGUCCUCCAACGGACUU----CUACUUGGCUGCUGUGUAACUUUUGCGCUUUU --...-----............((((...(((((((((..(((((.((((....-------.)))))))))(((...)))...----.))).))))).).))))............... ( -25.90) >DroSec_CAF1 30404 108 + 1 AACCCUAACCCCUCCCUAACUAACACUAUGAGUCAGUAAAGGACCCUGGUUGUC-------CACCAGGUCCUCCAACGGACUC----CUACUUGGCUGCUGUGUAACUUUUGCGCUUUU ...................((((...((.(((((.((..((((((.((((....-------.))))))))))...)).)))))----.)).)))).....(((((.....))))).... ( -25.20) >DroSim_CAF1 31973 108 + 1 AACCCUAACCCCUCCCUAACCAACACUAUGAGUCAGUAAAGGACCCUGGUUGUC-------CACCAGGUCCUCCAACGGACUC----CUACUUGGCUGCUGUGUAACUUUUGCGCUUUU ...................((((...((.(((((.((..((((((.((((....-------.))))))))))...)).)))))----.)).)))).....(((((.....))))).... ( -27.50) >DroEre_CAF1 29903 107 + 1 ACCCUUAA-----------CCAACACUAUGUGCCAAUGA-GGGCCUUGGUUGUCAGUCCAGCGCCAGUUCCUCCAAAGGACUGCUGGCUACUUGGCUUCUGUGUAACUUUUGCGCUUUU ........-----------...((((.....((((((((-.(((....))).))).......((((((((((....))))..))))))...)))))....))))............... ( -30.10) >consensus AACCCUAA__CCUCCCUAACCAACACUAUGAGCCAGUAAAGGACCCUGGUUGUC_______CACCAGGUCCUCCAACGGACUC____CUACUUGGCUGCUGUGUAACUUUUGCGCUUUU ......................((((....((((((....(((((.((((............)))))))))(((...)))...........))))))...))))............... (-20.29 = -19.97 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:59 2006