Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,466,827 – 5,466,927 |
Length | 100 |
Max. P | 0.909989 |
Location | 5,466,827 – 5,466,927 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 89.36 |
Mean single sequence MFE | -26.12 |
Consensus MFE | -22.57 |
Energy contribution | -22.41 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.14 |
Mean z-score | -1.67 |
Structure conservation index | 0.86 |
SVM decision value | 1.07 |
SVM RNA-class probability | 0.909989 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5466827 100 + 23771897 AAGUGCAUAUAAAUUGAAUGUAACUUUGCACUCAUGUAUGCAAACAGCGACGCACACAUUCAUACUUCGUCGAGCUGCAUGUGUAUUGGUGUGAGCGGAA ...((((((((...(((.((((....)))).)))))))))))........(((.(((((..((((..(((........))).))))..))))).)))... ( -26.50) >DroSec_CAF1 28365 100 + 1 AAGUGCAUAUAAAUUGAAUGUAACUUUGCACUCAUGUAUGCAAACAGCGACGCACACAUUCAUACUUUGGCGACCUGCAUGUGUAUUGGUGUGAGCGGGA ...((((((((...(((.((((....)))).)))))))))))........(((.(((((..((((....((.....))....))))..))))).)))... ( -28.80) >DroSim_CAF1 30001 100 + 1 AAGUGCAUAUAAAUUGAAUGUAACUUUGCACUCAUGUAUGCAAACAGCGACGCACACAUUCAUACUUCGGUGACCUGCAUGUGUAUUGGUGUGAGCGGGA ...((((((((...(((.((((....)))).)))))))))))........(((.(((((..((((....((.....))....))))..))))).)))... ( -27.50) >DroEre_CAF1 27944 94 + 1 AAGUGCAUAUAAAUUGAAUGUAACUUUGCACUCAUCUAUGCAAACAGCCACUCACACAUCCAUACUUUU----UCUGCGUGUGUGUUGGUGGGAGA--AA ...((((((.....(((.((((....)))).)))..)))))).....((((((((((((.((.......----..)).)))))))..)))))....--.. ( -24.10) >DroYak_CAF1 15768 96 + 1 AAGUGCAUAUAAAUUGAAUGUAACUUUGCACUCAUGUAUGCAAACAGCGACACACACAGCCAUACUUUU----UCUGCAUGUGUAUUGGUGUGAGUGGGA ...((((((((...(((.((((....)))).)))))))))))........(((.((((.((((((....----.........))).))))))).)))... ( -23.72) >consensus AAGUGCAUAUAAAUUGAAUGUAACUUUGCACUCAUGUAUGCAAACAGCGACGCACACAUUCAUACUUUG__GACCUGCAUGUGUAUUGGUGUGAGCGGGA ...((((((((...(((.((((....)))).)))))))))))........(((.((((((.((((.................)))).)))))).)))... (-22.57 = -22.41 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:56 2006