| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 566,053 – 566,147 |
| Length | 94 |
| Max. P | 0.762407 |
| Location | 566,053 – 566,147 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 66.50 |
| Mean single sequence MFE | -38.76 |
| Consensus MFE | -12.92 |
| Energy contribution | -15.28 |
| Covariance contribution | 2.36 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.33 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.762407 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 566053 94 + 23771897 CGUAACUCCCUGUUCUCAGGGAUC---------UUCGGGGUCGUCGACUUCUCGAUUGGGCCUG--GGCUUCGGAC-UUCGCGAAAGCGAAA------CUCCCGAGGCUAAU ......((((((....))))))..---------..((((.(((((((....)))).))).))))--((((((((..-(((((....))))).------...))))))))... ( -42.70) >DroSec_CAF1 12899 94 + 1 CGUAACUCCCUAUUCUCAGGGAUC---------UUCUGGGUCGUCGACUUCUCGGUUGGGCCUG--GGCUUCGGAC-UUCGCGAAAACGAUA------CUCCGGAGCCUAAU ......(((((......)))))..---------....(((((..(((((....))))))))))(--(((((((((.-.(((......)))..------.))))))))))... ( -34.40) >DroEre_CAF1 13156 94 + 1 CGUAACUCCCUACUCGCAGGGAUC---------CUCGGGGACGUCGACCUCGCGAUUGGGCCUG--GGCUUCGGAU-UUCGCGAAAGCGAUA------CUCCGCGGGAGAAC .....(((((...((((..((.((---------..((....))..))))..))))..((((...--.))))((((.-.((((....))))..------.)))).)))))... ( -41.60) >DroYak_CAF1 13566 109 + 1 CGUCACUCCCUAUUCGCAGGCAUCGUCGCCCAACUCGGGGACGUCGACUUCGCGAUUGGGCCUG--GGCUUCGAAC-UUCGCGAAAGCGAUACUCAUACUCCGAGGGAGAAC .....(((((...((((((((..((((.(((.....)))))))..).))).))))((((((...--.))...((..-.((((....))))...)).....)))))))))... ( -42.40) >DroAna_CAF1 16200 83 + 1 --------------GGCUGGCGUCG------ACCUCGG---CCUCCGCCUCCCGGUUGGGGAUGACGGCUCUGUCUAUCCUUGAUGGCGAUU------CCCAGCGGAAGAAC --------------.(((((.((((------.((..((---(....))).....((..(((((((((....)))).)))))..)))))))).------.)))))........ ( -32.70) >consensus CGUAACUCCCUAUUCGCAGGGAUC_________CUCGGGGACGUCGACUUCGCGAUUGGGCCUG__GGCUUCGGAC_UUCGCGAAAGCGAUA______CUCCGCGGGAGAAC ......(((((......)))))...........(((((((............(((...((((....))))))).....((((....))))........)))))))....... (-12.92 = -15.28 + 2.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:36 2006