Locus 1989

Sequence ID 3L_DroMel_CAF1
Location 5,466,605 – 5,466,700
Length 95
Max. P 0.560161
window3116

overview

Window 6

Location 5,466,605 – 5,466,700
Length 95
Sequences 4
Columns 96
Reading direction reverse
Mean pairwise identity 88.91
Mean single sequence MFE -20.70
Consensus MFE -14.77
Energy contribution -14.28
Covariance contribution -0.50
Combinations/Pair 1.14
Mean z-score -1.60
Structure conservation index 0.71
SVM decision value 0.05
SVM RNA-class probability 0.560161
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5466605 95 - 23771897
ACUUAAAAAGAGGAGGACCACCCGUUUAUGCAUGUAUAUAUGUAUGUAUAUUUUUGCAAGACUUCCGGCGACAUCCUUU-UUUAUUUUGGGCUUUA
.((((((((((((((((......((((.((((.(((((((....)))))))...))))))))....(....).))))))-))).)))))))..... ( -22.20)
>DroSec_CAF1 28149 89 - 1
ACUUAAAAGGAGGAGGACUUCCCGUUUAUGCAUGUAUA------UGUAUAUUUUUGCAAGACUUCCGGCGACAUCCUUU-UUUAUAUUGGGCUUUA
....((((((((((((.((((.....(((((((....)------)))))).....).))).)))))(....).))))))-)............... ( -18.90)
>DroEre_CAF1 27727 84 - 1
ACUUAAAAAGGGGAGGAC-----GUUUAUGCAUGUAUG------UGUAUAUUUUUGCAAGACUUCCGGCGACAUCCUUU-UUUAUAUUGGGCUUUA
...((((((((((.(((.-----((((.((((.((((.------...))))...)))))))).)))(....).))))))-))))............ ( -20.00)
>DroYak_CAF1 15560 85 - 1
ACUUAAAAAGAGGAGGAC-----GUUUAUGCUUGUAUA------UGUACAUUUUUGCAAGACUUCCGGCGACAUCCUUUUUUUAUAUUGGGCUUUA
...((((((((((((((.-----((((.(((.((((..------..)))).....))))))).)))(....).)))))))))))............ ( -21.70)
>consensus
ACUUAAAAAGAGGAGGAC_____GUUUAUGCAUGUAUA______UGUAUAUUUUUGCAAGACUUCCGGCGACAUCCUUU_UUUAUAUUGGGCUUUA
...((((.(((((((((......((((.((((((((((......))))))....)))))))).)))(....).)))))).))))............ (-14.77 = -14.28 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:55 2006