Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,463,996 – 5,464,105 |
Length | 109 |
Max. P | 0.515163 |
Location | 5,463,996 – 5,464,105 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 90.55 |
Mean single sequence MFE | -25.88 |
Consensus MFE | -18.09 |
Energy contribution | -20.01 |
Covariance contribution | 1.92 |
Combinations/Pair | 1.07 |
Mean z-score | -2.00 |
Structure conservation index | 0.70 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.515163 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5463996 109 - 23771897 UCAGCGUAGCUUGACAAUAAAAGUGUCAUUUUAAAAAUGAUAUAUGUAUGUGGGCCCCACAUUCUCAUUGCCAAACACAUCCCACAUGCAAAAGUUGCUCUUUGCCAUU ..((.(((((((..........((((((((.....)))))))).((((((((((..........................)))))))))).))))))).))........ ( -26.27) >DroSec_CAF1 25541 108 - 1 UCAGCGGAGCUUGACAAUAAAAGUGUCAUUUUAAAAAUGAUAUAUGUAUGUGGGCCCCACAUUCACAUCGC-AAACACAUCCCACAUGCAAAAGUUGCUGUGUGCCAUU ...(((.(((..(((.......((((((((.....)))))))).((((((((((.................-........))))))))))...)))))).)))...... ( -26.61) >DroSim_CAF1 26976 108 - 1 UCAGCGGAGCUUGACAAUAAAAGUGUCAUUUUAAAAAUGAUAUAUGUAUGUGGGCCCCACAUUCACAUCGC-AAACACAUCCCACAUGCAAAAGUUGCUGUGUGCCAUU ...(((.(((..(((.......((((((((.....)))))))).((((((((((.................-........))))))))))...)))))).)))...... ( -26.61) >DroEre_CAF1 25209 103 - 1 UCGGCGGAGCUUGACAAUAAAAGUGUCAUUUUAAAAAUGAUAUAUG----UGGGCU-CCCAUUCACAUGGC-AAACACAUACCAAAUGCAAAAGUUGCUGCGAGCCAUU ..((((((((((.(((......((((((((.....)))))))).))----))))))-))......(..(((-((...(((.....)))......)))))..).)))... ( -25.20) >DroYak_CAF1 12947 103 - 1 UCAGCGGAGCUUGACAAUAAAACUGUCAUUUUAAAAAUGAUAUAUG----UGGGCU-CGCAUUCACAUGGC-AAACACAUUCCACAUGCAAAAGUUGCUGUGUGCCAGU ...(((.((((((...(((....(((((((.....)))))))))).----))))))-))).......((((-(.........((((.(((.....)))))))))))).. ( -24.70) >consensus UCAGCGGAGCUUGACAAUAAAAGUGUCAUUUUAAAAAUGAUAUAUGUAUGUGGGCCCCACAUUCACAUCGC_AAACACAUCCCACAUGCAAAAGUUGCUGUGUGCCAUU .(((((..((((..........((((((((.....)))))))).((((((((((..........................)))))))))).)))))))))......... (-18.09 = -20.01 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:51 2006