Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,454,401 – 5,454,511 |
Length | 110 |
Max. P | 0.786638 |
Location | 5,454,401 – 5,454,511 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.08 |
Mean single sequence MFE | -30.21 |
Consensus MFE | -16.34 |
Energy contribution | -19.07 |
Covariance contribution | 2.73 |
Combinations/Pair | 1.19 |
Mean z-score | -1.77 |
Structure conservation index | 0.54 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.786638 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5454401 110 + 23771897 AGAUA---------ACGUCCUCUACCCCCUCAAGU-UACCUCCCAACAUCCAGUUGGGAUCCACCACCGGCACCACCGGGAAUUUCAGAUGACUACUGUCGCAACAAGGAGGAUGGCUCG .((..---------.((((((((.....((.((((-(...(((((((.....))))))).......((((.....)))).))))).))..(((....))).......))))))))..)). ( -34.30) >DroSec_CAF1 15903 119 + 1 AGAUAACCACUGAAACGUCCUCUACCCCCUCAAUU-UACCACCCAACAACCAGUUGGGAUCCACCACCGGCACCACCGGGAAUUUCAGAUGACUACUGUCGCAAUAAGGAGGAUGGCUCG ...........((..((((((((........((((-(....((((((.....))))))........((((.....)))))))))...(.((((....))))).....))))))))..)). ( -33.80) >DroSim_CAF1 16020 119 + 1 AGAUAACCACUGAAACGUCCUCUACCCCCUCAAUU-UACCACCCAACAACCAGUUGGGAUCCACCACCGGCACCGCCGGGAAUUUCAGAUGACUACUGUCGCAAUAAGGAGGAUGGCUCG ...........((..((((((((........((((-(....((((((.....))))))........(((((...))))))))))...(.((((....))))).....))))))))..)). ( -36.00) >DroEre_CAF1 15501 116 + 1 AGAUAACAACAGAAGCGUCCUCUACCC---CAAAC-UACCCCCCAACAUCCAGUUGGGAUCCACCACCUGCACCACCUGGAAUUUCAGAUGAUUACUGUCGCAAUAAAGCCGAUGGGUCG .(((............(((.(((....---.....-.....((((((.....)))))).((((..............)))).....))).)))..(((((((......).))))))))). ( -21.04) >DroYak_CAF1 2722 116 + 1 UGAUAACCAAAGAAACAUCCUCUACAC---CAAGU-AACCCCCCAACAUCCAGUUGGGAUCCACCACCUGCACCACCGGGAAUUUCAGAUGACUACUGUCGCAAUAAGGAGGAUGGCUCC ...........((..((((((((....---.....-.....((((((.....))))))..........(((.((....))..........(((....))))))....))))))))..)). ( -30.60) >DroMoj_CAF1 7191 102 + 1 ------------------CGUCCAACCACUGAGGAGAAUUGGCCCACAUCGGACUAUGAUCCACCACCGCCACCACCGGGCGUUGCGGAAUCAUUCUGUAAGAACUUCAAGGAUGGUUCG ------------------.((((..((.....)).((..((.....))))))))...((.(((((..((((.......))))(((((((.....))))))).........)).))).)). ( -25.50) >consensus AGAUAACCAC_GAAACGUCCUCUACCCCCUCAAGU_UACCACCCAACAUCCAGUUGGGAUCCACCACCGGCACCACCGGGAAUUUCAGAUGACUACUGUCGCAAUAAGGAGGAUGGCUCG ...............((((((((..................((((((.....))))))........((((.....))))...........(((....))).......))))))))..... (-16.34 = -19.07 + 2.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:43 2006