Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,454,167 – 5,454,287 |
Length | 120 |
Max. P | 0.997169 |
Location | 5,454,167 – 5,454,287 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.17 |
Mean single sequence MFE | -37.00 |
Consensus MFE | -33.20 |
Energy contribution | -33.88 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.11 |
Mean z-score | -2.06 |
Structure conservation index | 0.90 |
SVM decision value | 2.81 |
SVM RNA-class probability | 0.997169 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5454167 120 - 23771897 UAGUUCCAUCCGUAGGUUCUGGCGUUUCAAUCGAGUAGUAGAUACAUUCUACAGCUUGGGGAUAAUUACAUUGCUGGGUCUUAUUAUCCCACCAGAGAUUUGCGGGACACAACUUCACCG .((((...((((((((((((((.........(((((.(((((.....))))).)))))((((((((.((........))...)))))))).))))).)))))))))....))))...... ( -38.20) >DroSec_CAF1 15669 120 - 1 UAGUUCCAUCCGUAGGUUCUGGCGUGUCAAUCGAGUAGUAGAUACAUUCUACAGCUUGGGGAUAAUUACACUGCUGAGUCCCAUUAUCCCACCAGAGAUUUGCGGGACACAACUUCACCG .((((...((((((((((((((.........(((((.(((((.....))))).)))))((((((((...(((....)))...)))))))).))))).)))))))))....))))...... ( -39.60) >DroSim_CAF1 15786 120 - 1 UAGUUCCGUCCGUAGGUUCUGGCGUUUCAAUCGAAUAGUAGAUACAUUCUACAGCUUGGGGAUAAUUACACUGCUGAGUCCCAUUAUCCCACCAGAGAUUUGCGGGACACAACUUCACUG .((((...((((((((((((((...............(((((.....)))))......((((((((...(((....)))...)))))))).))))).)))))))))....))))...... ( -35.00) >DroEre_CAF1 15267 120 - 1 UAGUUCCAUCCGUGGGUUCUGGCGUAUCAAUAGAGUAGUAUAUACAUUCUACUGCUUGGGGAUAAUUACACAGCUGAGUCUUAUUAUCCCACCAGAGACUUGCGGGGCACAGCUUCACCG ..((.((..(((..((((((((..........((((((((.........)))))))).((((((((...((......))...)))))))).))))).)))..))))).)).......... ( -38.30) >DroYak_CAF1 2500 120 - 1 UAGUUCCAUCCGUAGGUUCUGGCGUUUCAAUGGAGUAGUAUAUACAUUCCACAGCUUGUGGAUAAUUGCACAGCUGGGUCUUAUUAUCCCACCAGAGAUUUGCGGGACACAGCUUCACCG .((((...((((((((((((((.(......((((((.((....))))))))(((((.(((.(....).)))))))).............).))))).)))))))))....))))...... ( -33.90) >consensus UAGUUCCAUCCGUAGGUUCUGGCGUUUCAAUCGAGUAGUAGAUACAUUCUACAGCUUGGGGAUAAUUACACUGCUGAGUCUUAUUAUCCCACCAGAGAUUUGCGGGACACAACUUCACCG .((((...((((((((((((((.........(((((.(((((.....))))).)))))((((((((...((......))...)))))))).))))).)))))))))....))))...... (-33.20 = -33.88 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:42 2006