Locus 1980

Sequence ID 3L_DroMel_CAF1
Location 5,453,026 – 5,453,144
Length 118
Max. P 0.607852
window3102

overview

Window 2

Location 5,453,026 – 5,453,144
Length 118
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 88.76
Mean single sequence MFE -28.35
Consensus MFE -23.23
Energy contribution -22.90
Covariance contribution -0.33
Combinations/Pair 1.23
Mean z-score -1.93
Structure conservation index 0.82
SVM decision value 0.15
SVM RNA-class probability 0.607852
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5453026 118 + 23771897
UCGCUUAAUUUUAAUGGCUUGCCGGGCAUUAAACUUCU-AGCUUCAUUUAUGUUUAUGUUCGCAUUU-UUAUUCGUGUAAUUUACGCGUCGAGUGCUGAUCAUAAAUUGUGACUCGAACU
(((((.((.(((((((.((....)).))))))).))..-))).((((....(((((((.((((((((-.....((((((...))))))..)))))).)).))))))).))))...))... ( -28.60)
>DroSec_CAF1 14534 118 + 1
UCGCUUCAUUUUAAUGGCUUGCCGGGCAUUAAACUUCU-AGCUUCAUUCACGUUUAUGUUCGCAUUU-UUAUUCGUGUAAUUUACGCGUCGAGUGCUGAUCAUAAAUUGUGACUCGAACU
..(((....(((((((.((....)).))))))).....-)))(((..(((((((((((.((((((((-.....((((((...))))))..)))))).)).)))))).)))))...))).. ( -30.40)
>DroSim_CAF1 14651 118 + 1
UCGCUUAAUUUUAAUGGCUUGCCGGGCAUUAAACUUCU-AGCUUCAUUCACGUUUAUGUUCGCAUUU-UUAUUCGUGUAAUUUACGCGUCGAGUGCUGAUCAUAAAUUGUGACUCGAACU
..(((.((.(((((((.((....)).))))))).))..-)))(((..(((((((((((.((((((((-.....((((((...))))))..)))))).)).)))))).)))))...))).. ( -30.40)
>DroEre_CAF1 14220 118 + 1
UCGCUUAAUUUUAAUGGCUUGCCGGGCAUUAAACUUCC-AGCUUCAUUCAUGUUUAUGUUCGCAUUU-UUAUUUGUGUAAUUUACGCGUCAAGUGCUGAUCAUAAAUUGUGACUCGAACU
(((((....(((((((.((....)).))))))).....-))).((((....(((((((.((((((((-.....((((((...))))))..)))))).)).))))))).))))...))... ( -25.80)
>DroYak_CAF1 1404 118 + 1
UCGCUUAAUUUUAAUGGCUUGCCGGGCAUUAAAUUUCU-AGCUUCAUUCACGUUUAUGCUCGCAUUU-UUAUUUGUGUAAUUUACGCGUCGAGUGCUGAUCAUAAAUUGUGACUGGAACC
..(((....(((((((.((....)).))))))).....-)))((((.(((((((((((.((((((((-.....((((((...))))))..)))))).)).)))))).))))).))))... ( -32.50)
>DroMoj_CAF1 5916 110 + 1
UCGCUUUAUUUUAAUGGCUGGC---GCGUUGAAGUCCUCGGCUUCAUUUAUGUUUAUGCUCGCAUUUUUUAUUUGUGUAAUUCAAGCGUCGAGUGGCGCUCAUAAAUUCAGGU-------
..((((..........((.(((---((((((((((.....))))))...))))....))).)).......(((((((.......((((((....)))))))))))))..))))------- ( -22.41)
>consensus
UCGCUUAAUUUUAAUGGCUUGCCGGGCAUUAAACUUCU_AGCUUCAUUCACGUUUAUGUUCGCAUUU_UUAUUCGUGUAAUUUACGCGUCGAGUGCUGAUCAUAAAUUGUGACUCGAACU
..(((....(((((((.(......).)))))))......))).....(((((((((((.((((((((......(((((.....)))))..)))))).)).)))))).)))))........ (-23.23 = -22.90 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:41 2006