Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,452,792 – 5,452,889 |
Length | 97 |
Max. P | 0.725374 |
Location | 5,452,792 – 5,452,889 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 95.62 |
Mean single sequence MFE | -19.06 |
Consensus MFE | -16.82 |
Energy contribution | -16.66 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.13 |
Mean z-score | -1.33 |
Structure conservation index | 0.88 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.725374 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5452792 97 + 23771897 CUGAAGAAGGGAUGGA---AAAAAGGUCAGCCAGACAGCAUAAAAACAUCCUUCAGACAAAUAGAUUUGUAUGCUUUUAAGUAAUUUGCAGCACAAAUUG ((((....((((((..---......(((.....)))..........)))))))))).......(((((((.(((....((....)).)))..))))))). ( -20.37) >DroSec_CAF1 14301 96 + 1 CUGAAGAAGGGAUGG----AAAAAGGUCAGCCAGACAGCAUAAAAACAUCCUUCAGACAAAUAGAUUUGUAUGCUUUUAAGUAAUUUGCAGCACAAAUUG ((((....((((((.----......(((.....)))..........)))))))))).......(((((((.(((....((....)).)))..))))))). ( -19.93) >DroSim_CAF1 14417 97 + 1 CUGAAGAAGGGAUGGC---AAAAAGGUCAGCCAGACAGCAUAAAAACAUCCUUCAGACAAAUAGAUUUGUAUGCUUUUAAGUAAUUUGCAGCACAAAUUG ((((....((((((..---......(((.....)))..........)))))))))).......(((((((.(((....((....)).)))..))))))). ( -20.37) >DroEre_CAF1 13979 97 + 1 CUGAAGAAGGGAUGGA---AAAAAGCUCAGCCAGACAGCAUAAAAACAUCCUUUAGACAAAUAGAUUUGUAUGCUUUUAAGUAAUUUGCAGCACAAAUUG .((...((((((((..---.....(((.........))).......))))))))...))....(((((((.(((....((....)).)))..))))))). ( -18.54) >DroYak_CAF1 1166 100 + 1 CUGGAGAAGGGAUGGAUAAAAAAAGCUCAGCCAGACAGCAUAAAAACAUCUUUUAGACAAAUAGAUUUGUAUGCUUUUAAGUAAUUUGCAGUACAAAUUG .((...((((((((((..........)).((......)).......))))))))...))....(((((((((((....((....)).))).)))))))). ( -16.10) >consensus CUGAAGAAGGGAUGGA___AAAAAGGUCAGCCAGACAGCAUAAAAACAUCCUUCAGACAAAUAGAUUUGUAUGCUUUUAAGUAAUUUGCAGCACAAAUUG ((((....((((((...........(((.....)))..........)))))))))).......(((((((.(((.............)))..))))))). (-16.82 = -16.66 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:40 2006