Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,450,439 – 5,450,534 |
Length | 95 |
Max. P | 0.967782 |
Location | 5,450,439 – 5,450,534 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 96.32 |
Mean single sequence MFE | -21.55 |
Consensus MFE | -21.16 |
Energy contribution | -21.23 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.04 |
Mean z-score | -2.23 |
Structure conservation index | 0.98 |
SVM decision value | 1.62 |
SVM RNA-class probability | 0.967782 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5450439 95 + 23771897 UUUUCCUUUCACCUGCAUUGAAAGGAAAACGUGGCUUAUAUCUGCCCAGAUAAUAUUAAUUGCCGCUGCAUUUGUUAAACUAUCUGAACUGACCC (((((((((((.......)))))))))))...(((........)))((((((...((((((((....)))...)))))..))))))......... ( -22.70) >DroSec_CAF1 11896 95 + 1 UUUUCCUUUCACCUGCAUUGAAAGCAAAACGUGGCUUAUAUCUGCCCAGAUAAUAUUAAUUGCCGCUGCAUUUGUUAAACUAUCUGAACUGACCC ((((.((((((.......)))))).))))...(((........)))((((((...((((((((....)))...)))))..))))))......... ( -15.90) >DroSim_CAF1 11994 95 + 1 UUUUCCUUUCACCUGCAUUGAAAGGAAAACGUGGCUUAUAUCUGCCCAGAUAAUAUUAAUUGCCGCUGCAUUUGUUAAACUAUCUGAACUGACCC (((((((((((.......)))))))))))...(((........)))((((((...((((((((....)))...)))))..))))))......... ( -22.70) >DroEre_CAF1 11596 95 + 1 UUUUCCUUUCACCUGCAUUGAAAGGAAAGCGUGGCUUAUAUCUGCCCAGAUAAUAUUAAUUGCUGCUGCAUUUGCAAAGCUAUCUGAACCGACCC (((((((((((.......)))))))))))...(((........)))((((((.........(((..(((....))).)))))))))......... ( -24.90) >consensus UUUUCCUUUCACCUGCAUUGAAAGGAAAACGUGGCUUAUAUCUGCCCAGAUAAUAUUAAUUGCCGCUGCAUUUGUUAAACUAUCUGAACUGACCC (((((((((((.......)))))))))))...(((........)))((((((....(((.(((....))).)))......))))))......... (-21.16 = -21.23 + 0.06)
Location | 5,450,439 – 5,450,534 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 96.32 |
Mean single sequence MFE | -25.75 |
Consensus MFE | -24.19 |
Energy contribution | -24.69 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.26 |
Structure conservation index | 0.94 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.950247 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5450439 95 - 23771897 GGGUCAGUUCAGAUAGUUUAACAAAUGCAGCGGCAAUUAAUAUUAUCUGGGCAGAUAUAAGCCACGUUUUCCUUUCAAUGCAGGUGAAAGGAAAA ..(((.(((((((((((((((....(((....))).)))).))))))))))).)))..........(((((((((((.......))))))))))) ( -26.50) >DroSec_CAF1 11896 95 - 1 GGGUCAGUUCAGAUAGUUUAACAAAUGCAGCGGCAAUUAAUAUUAUCUGGGCAGAUAUAAGCCACGUUUUGCUUUCAAUGCAGGUGAAAGGAAAA ..(((.(((((((((((((((....(((....))).)))).))))))))))).)))..........((((.((((((.......)))))).)))) ( -21.80) >DroSim_CAF1 11994 95 - 1 GGGUCAGUUCAGAUAGUUUAACAAAUGCAGCGGCAAUUAAUAUUAUCUGGGCAGAUAUAAGCCACGUUUUCCUUUCAAUGCAGGUGAAAGGAAAA ..(((.(((((((((((((((....(((....))).)))).))))))))))).)))..........(((((((((((.......))))))))))) ( -26.50) >DroEre_CAF1 11596 95 - 1 GGGUCGGUUCAGAUAGCUUUGCAAAUGCAGCAGCAAUUAAUAUUAUCUGGGCAGAUAUAAGCCACGCUUUCCUUUCAAUGCAGGUGAAAGGAAAA ..(((.((((((((((((((((....)))).))).........))))))))).)))...........((((((((((.......)))))))))). ( -28.20) >consensus GGGUCAGUUCAGAUAGUUUAACAAAUGCAGCGGCAAUUAAUAUUAUCUGGGCAGAUAUAAGCCACGUUUUCCUUUCAAUGCAGGUGAAAGGAAAA ..(((.(((((((((((........(((....)))......))))))))))).)))...........((((((((((.......)))))))))). (-24.19 = -24.69 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:35 2006