Locus 1974

Sequence ID 3L_DroMel_CAF1
Location 5,450,325 – 5,450,438
Length 113
Max. P 0.623871
window3094

overview

Window 4

Location 5,450,325 – 5,450,438
Length 113
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 82.21
Mean single sequence MFE -28.72
Consensus MFE -13.37
Energy contribution -14.05
Covariance contribution 0.68
Combinations/Pair 1.16
Mean z-score -2.35
Structure conservation index 0.47
SVM decision value 0.18
SVM RNA-class probability 0.623871
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5450325 113 - 23771897
UUUACAUAUUUAUAGGUGUGAAAAGCCCGG--G-----CAAACGAAAUUGCUGCAUUUCGUGAGAAAAUGCAAUUAAAAAUGCUUUCUUUGCCGGAGACCAAACAUAUUAAUUGCCCGAC
(((((((........))))))).....(((--(-----(((....((((((....((((....))))..)))))).....((.(((((.....))))).))..........))))))).. ( -29.20)
>DroSec_CAF1 11782 113 - 1
UUUACAUUUUUAUAGGUGUGAAAAGCCCGG--G-----CAAACGAAAUUGCUGCAUUUCGUGAGAAAAUGCAAUUAAAAAUGCUUUCUCUGCCGGAGACCAAACAUAUUAAUUGCCCGAC
(((((((((....))))))))).....(((--(-----(((....((((((....((((....))))..))))))..........((((.....)))).............))))))).. ( -31.30)
>DroSim_CAF1 11880 113 - 1
UUUACAUUUUUAUAGGUGUGAAAAGCCCGG--G-----CAAACGAAAUUGCUGCAUUUCGUGAGAAAAUGCAAUUAAAAAUGCUUUCUCUGCCGGAGACCAAACAUAUUAAUUGCCCGAC
(((((((((....))))))))).....(((--(-----(((....((((((....((((....))))..))))))..........((((.....)))).............))))))).. ( -31.30)
>DroEre_CAF1 11482 113 - 1
UUUACAUAUUUAUAGGUGUGAAAAGCCGGG--G-----CAAUCGAAAUUGCGGCCUUUCGUGAGAAAAUGCAAUUAAAACAGCUUUCUCUACCGGAGACCAAACAUAUUAAUUGCCCGAC
(((((((........)))))))......((--(-----((((..((((((((...((((....)))).)))))))..........((((.....)))).........)..)))))))... ( -30.90)
>DroMoj_CAF1 2607 109 - 1
UAUUUAUUUAUAUAGGUGCGAAAAUCAACGUUGCACACCAACAAAAAGUGCUGCAUUUCGUGUGGAAAGGUAAUUAAAAAUACCU---UUGAACGAGU----ACAAAUUAAUUGCC----
...............((((........(((.(((((((.........))).))))...)))((..(((((((........)))))---))..))..))----))............---- ( -20.90)
>consensus
UUUACAUUUUUAUAGGUGUGAAAAGCCCGG__G_____CAAACGAAAUUGCUGCAUUUCGUGAGAAAAUGCAAUUAAAAAUGCUUUCUCUGCCGGAGACCAAACAUAUUAAUUGCCCGAC
(((((((((....))))))))).................................((((....))))..((((((((........((((.....)))).........))))))))..... (-13.37 = -14.05 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:33 2006