Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,449,734 – 5,449,907 |
Length | 173 |
Max. P | 0.963413 |
Location | 5,449,734 – 5,449,853 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.66 |
Mean single sequence MFE | -40.72 |
Consensus MFE | -35.41 |
Energy contribution | -35.48 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.03 |
Mean z-score | -2.05 |
Structure conservation index | 0.87 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.750583 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5449734 119 + 23771897 CCUCCUGGGGCAGCACUUUCGCUGGGUUUUGUUCCGCACUGCUUACGAGCUAACAACAAUCAUCAGCACACUGUGCCC-CCGGGCCAAGGAAUGCACAUCCGACACCGUGUAUCCUGGCC ....((((((..((((....(((((...(((((.......(((....)))....)))))...))))).....))))))-))))((((.(((.(((((..........)))))))))))). ( -41.30) >DroSec_CAF1 11187 120 + 1 CCUCCUGGGGCAGCACUUUCGCUGGGUUUUGUUCCGCACUGCUUACGAGCUAACAACAAUCAUCAGCACACAGUGCCCCCCGGGCCAAGGAAUGCACAUCCGACACCGUGUAUCCUGGCC ....((((((..(((((...(((((...(((((.......(((....)))....)))))...)))))....))))).))))))((((.(((.(((((..........)))))))))))). ( -42.80) >DroSim_CAF1 11285 120 + 1 CCUCCUGGGGCAGCACUUUCGCUGGGUUUUGUUCCGCACUGCUUACGAGCUAACAACAAUCAUCAGCACACAGUGCCCUCCGGGCCAAGGAAUGCACAUCCGACACCGUGUAUCCUGGCC ....((((((..(((((...(((((...(((((.......(((....)))....)))))...)))))....))))).))))))((((.(((.(((((..........)))))))))))). ( -39.80) >DroEre_CAF1 10924 118 + 1 CCUCCUGGGGCAGCACUUUCGUUGGGU-UUGUUUCGCACUGCUUACCAGCUAACAACAAUCAUCAGCACACUGUGGCC-CCGGGCCAAGGAAUGCACAUCCGACACCGUGUAUCCUGGCC ....(((((((.(((.....(((((..-(((((.....(((.....))).....)))))...)))))....))).)))-))))((((.(((.(((((..........)))))))))))). ( -39.00) >consensus CCUCCUGGGGCAGCACUUUCGCUGGGUUUUGUUCCGCACUGCUUACGAGCUAACAACAAUCAUCAGCACACAGUGCCC_CCGGGCCAAGGAAUGCACAUCCGACACCGUGUAUCCUGGCC ....((((((..((((....(((((...(((((.......(((....)))....)))))...))))).....)))))).))))((((.(((.(((((..........)))))))))))). (-35.41 = -35.48 + 0.06)
Location | 5,449,813 – 5,449,907 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.98 |
Mean single sequence MFE | -29.10 |
Consensus MFE | -17.17 |
Energy contribution | -17.89 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.10 |
Mean z-score | -2.09 |
Structure conservation index | 0.59 |
SVM decision value | 1.55 |
SVM RNA-class probability | 0.963413 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5449813 94 + 23771897 CGGGCCAAGGAAUGCACAUCCGACACCGUGUAUCCUGGCCACUUUCCCCGCCCAU----------UUCCCAGGCCCACC--------------CA--UCCUGUCAGCAUGCAACAAAUGC .(((((.((((.(((((..........)))))))))(((..........)))...----------......)))))...--------------..--........((((.......)))) ( -25.20) >DroSec_CAF1 11267 94 + 1 CGGGCCAAGGAAUGCACAUCCGACACCGUGUAUCCUGGCCACUUUCCCCGCCCAU----------UUCCCAGGACCACC--------------CA--UCCUGUCAGCAUGCAACAAAUGC ..(((((.(((.(((((..........)))))))))))))...............----------....(((((.....--------------..--)))))...((((.......)))) ( -25.20) >DroSim_CAF1 11365 94 + 1 CGGGCCAAGGAAUGCACAUCCGACACCGUGUAUCCUGGCCACUUUCCCCGCCCAU----------UUCCCAGGACCACC--------------CA--UCCUGUCAGCAUGCAACAAAUGC ..(((((.(((.(((((..........)))))))))))))...............----------....(((((.....--------------..--)))))...((((.......)))) ( -25.20) >DroEre_CAF1 11002 108 + 1 CGGGCCAAGGAAUGCACAUCCGACACCGUGUAUCCUGGCCACUUUCCCCGCCCAU----------UUUCCAGGACCUCCCAUCCCCCAUCCCCCA--UCCUGUCAGCAUGCAACAAAUGC ..(((((.(((.(((((..........)))))))))))))...............----------....(((((.....................--)))))...((((.......)))) ( -23.80) >DroMoj_CAF1 2166 111 + 1 C-GGGCAAGGAAUGCACAGGCGACACGAGGUG--CUGCCAGCACCAACAGCUGCAGCUGCAGCUCCACCCAGCACCAGC-----UGCGUGCUGCGUGCUCUGU-UGCAUGCAACAAAUGC .-..(((.....((((((((.(.((((.((((--(.....)))))..((((((((((((..(((......)))..))))-----)))).))))))))))))).-)))))))......... ( -46.10) >consensus CGGGCCAAGGAAUGCACAUCCGACACCGUGUAUCCUGGCCACUUUCCCCGCCCAU__________UUCCCAGGACCACC______________CA__UCCUGUCAGCAUGCAACAAAUGC ..(((((.(((.(((((..........))))))))))))).............................((((.........................))))...((((.......)))) (-17.17 = -17.89 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:32 2006