| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 559,676 – 559,778 |
| Length | 102 |
| Max. P | 0.952635 |
| Location | 559,676 – 559,778 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 90.69 |
| Mean single sequence MFE | -31.38 |
| Consensus MFE | -28.89 |
| Energy contribution | -28.95 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.92 |
| SVM decision value | 1.42 |
| SVM RNA-class probability | 0.952635 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 559676 102 + 23771897 GCAGCAACUAAUUUUUCGCCCUCCUGGGGUCGAUUACUCGGUUGUCCCAACCGAGAAUUUAUUAAAAUCGGUCCUUCGAGGGAGGCACUUCCUAUAUAAUGA ..................(((((..(((..(((((.((((((((...))))))))..((....)))))))..)))..)))))(((.....)))......... ( -32.10) >DroSec_CAF1 6638 102 + 1 GCAGCAAAUAAUUUUUCGCCCUCCUGGGGUCGAUUACUCGGUUGGCCCAACCGAGAAUUUAGUAAAAUCGGUCGUUCGAGGGAGGCACUUCCUAUAUAAUGA .................(((..(((.(((.(((((.((((((((...))))))))......(......))))))))).)))..)))................ ( -29.20) >DroEre_CAF1 6689 102 + 1 GCAGCAACUAAUUUUUCGCCCUCCCCGGGUCGAUUACUCGGUUGUCCCAACUGAGAGUUUAGAAAAAUCGGUCCUUGGAGGGUGGCACUUCCUAUAUAAUGA ...............(((((((((..((..(((((.((((((((...))))))))..........)))))..))..)))))))))................. ( -34.00) >DroYak_CAF1 6918 102 + 1 GCAGCAACUAAUUUCUCGCCCUCCUGGGCUCGAUUACUCGGUUAUCUUAACCGGGAGUUUAGAAAGAUCGGUCCUUCGAGGGUGGCACUUCCUAUAUAAUGA ...............((((((((..((((.(((((.((((((((...))))))))..........)))))))))...))))))))................. ( -30.20) >consensus GCAGCAACUAAUUUUUCGCCCUCCUGGGGUCGAUUACUCGGUUGUCCCAACCGAGAAUUUAGAAAAAUCGGUCCUUCGAGGGAGGCACUUCCUAUAUAAUGA ...............((((((((..(((..(((((.((((((((...))))))))..((....)))))))..)))..))))))))................. (-28.89 = -28.95 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:33 2006