Locus 1968

Sequence ID 3L_DroMel_CAF1
Location 5,446,585 – 5,446,705
Length 120
Max. P 0.974614
window3083

overview

Window 3

Location 5,446,585 – 5,446,705
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 94.31
Mean single sequence MFE -25.65
Consensus MFE -22.26
Energy contribution -22.32
Covariance contribution 0.06
Combinations/Pair 1.03
Mean z-score -3.10
Structure conservation index 0.87
SVM decision value 1.73
SVM RNA-class probability 0.974614
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5446585 120 + 23771897
UCGUCAUUAAAAAGUUCAAUUAUCAACGCUGGCCAUCAUUUGCCAACCUUUCGCAAAUAAGGGAUGUAAAUUCCUCAAAUUACAAACUUUAAAUUGAGUCAUAAAAUGGCGUACAAAACU
.(((((((......(((((((........((((........))))............(((((..(((((..........)))))..))))))))))))......)))))))......... ( -21.10)
>DroSec_CAF1 8141 120 + 1
UCGUCAUUAAAAAGUUCAAUUGUCAACGCUGGCAAUCAUUUGCCAACCUAUCGCAAACAAGGGAUGUAAAUUCCUCAAAUUACAAACUUUAAAUUGAGUCAUAAAAUGGCGCACAAAACU
.(((((((......(((((((........((((((....))))))..............((((((....))))))................)))))))......)))))))......... ( -23.50)
>DroSim_CAF1 8178 120 + 1
UCGUCAUUAAAAAGUUCAAUUAUCAACGCUGGCAAUCAUUUGCCAACCAAUCGCAAACAAGGGAUGUAAAUUCCUCAAAUUACAAACUUUAAAUUGAGUCAUAAAAUGGCGCACAAAACU
.(((((((......(((((((........((((((....))))))..............((((((....))))))................)))))))......)))))))......... ( -23.50)
>DroEre_CAF1 7957 120 + 1
CCGUCAUUAAAAAGUUCAAUUAUCAUCGCUGGCAAUCAUUUGCCAGCCUCCCACAAACAAGGGAUGUGAAUUGCUCAAAUUACAAACUUUAAAUUGAGUCAUAAAAUGGCGCACAAAACU
.(((((((....((((((.........((((((((....)))))))).((((........))))..))))))((((((.(((.......))).)))))).....)))))))......... ( -34.50)
>consensus
UCGUCAUUAAAAAGUUCAAUUAUCAACGCUGGCAAUCAUUUGCCAACCUAUCGCAAACAAGGGAUGUAAAUUCCUCAAAUUACAAACUUUAAAUUGAGUCAUAAAAUGGCGCACAAAACU
.(((((((......(((((((........((((((....)))))).............((((..(((((.((....)).)))))..)))).)))))))......)))))))......... (-22.26 = -22.32 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:23 2006