| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,442,769 – 5,442,884 |
| Length | 115 |
| Max. P | 0.863479 |
| Location | 5,442,769 – 5,442,884 |
|---|---|
| Length | 115 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 95.93 |
| Mean single sequence MFE | -23.67 |
| Consensus MFE | -23.63 |
| Energy contribution | -23.30 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.78 |
| Structure conservation index | 1.00 |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.863479 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5442769 115 + 23771897 AAGGACAAAGAAUGAAAGUGCCAUCGAAAGUGCAAAUAUAUUGCACAAAUGUAAUUAUAGCUCGAGCUCGAAUAAUAUUUUAGAAGUGAAAGAGAUCUUCGGGCAAAGUACAUGG .................((((..((((..((((((.....))))))....((.......))))))(((((((.....(((((....)))))......)))))))...)))).... ( -23.10) >DroSec_CAF1 4323 114 + 1 AAGGACAAAGAAUGAAAGUGCCAUCGAAAGUGCAAAUAUAUUGCACAAAUGUAAUUAUAGCUCGAGCUUGAAUAAUUUUUUAGAAGUGAAAGAGAUCUUCAGGCAAAGUGCAGG- .................(..(..((((..((((((.....))))))....((.......))))))(((((((...(((((((....)))))))....)))))))...)..)...- ( -23.40) >DroSim_CAF1 4374 114 + 1 AAGGACAAAGAACGAAAGUGCCAUCGAAAGUGCAAAUAUAUUGCACAAAUGUAAUUAUAGCUCGAGCUUGAAUAAUUUUUUAGAAGUGAAAGAGAUCUUCAGGCAAAGUGCAGG- ..(.((.....((....))....((((..((((((.....))))))....((.......))))))(((((((...(((((((....)))))))....)))))))...)).)...- ( -24.50) >consensus AAGGACAAAGAAUGAAAGUGCCAUCGAAAGUGCAAAUAUAUUGCACAAAUGUAAUUAUAGCUCGAGCUUGAAUAAUUUUUUAGAAGUGAAAGAGAUCUUCAGGCAAAGUGCAGG_ .................((((..((((..((((((.....))))))....((.......))))))(((((((...(((((((....)))))))....)))))))...)))).... (-23.63 = -23.30 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:12 2006