Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,431,367 – 5,431,482 |
Length | 115 |
Max. P | 0.514717 |
Location | 5,431,367 – 5,431,482 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.09 |
Mean single sequence MFE | -28.45 |
Consensus MFE | -18.33 |
Energy contribution | -18.77 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.21 |
Mean z-score | -1.88 |
Structure conservation index | 0.64 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.514717 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5431367 115 + 23771897 AAAGGGGAUAG-----CUUUUUCAUCUUAUGAUGGAACUUUCUAAAAUAGUACUGCGUGGAAGUGAGAUGAAAACCUAUCCCAAUAUUUAGGGGUUAAUGGCAAGUCACAAUGCAAAUGU ....(((((((-----..((((((((((((..((((....))))........((....))..)))))))))))).)))))))..................(((........)))...... ( -26.10) >DroSec_CAF1 1556 115 + 1 AAUGGGGAUUG-----CUGUUCCAUCUUAUGAUGGAACUUUCUAAAAUAGUACUGUAUGAAAGUGAGAUGAAAACCUAUCCCAAUAUUUAGGGGUUAAUGGCAAGUCCCAAUGUAAAUGU ..((((..(((-----((((((((((....))))))))(..(((((....((((.......)))).((((......))))......)))))..).....)))))..)))).......... ( -32.50) >DroSim_CAF1 1612 115 + 1 AAUGGGGAUUG-----CCGUUCCAUCUUAUGAUGGAACUUUCUAAAAUAGUACUGUAUGAAAGUGAGAUGAAAACCUAUCCCAAUAUUUAGGGGUUAAUGGCAAGUCACAAUGCAAAUGU ..((.(..(((-----((((((((((....))))))))(..(((((....((((.......)))).((((......))))......)))))..).....)))))..).)).......... ( -28.30) >DroEre_CAF1 1504 118 + 1 AAAGGGGAUUGAAGGGCUGU-AUUUCUUAUCACAGAACUUACAAAAAUAGUUCUGUAUGAAAGUGAGAUGGAAACCUAUCCCAAUAC-UAGGGGUUAAUGGCAAGUCACAAUGCAAAUGU ....(((((...(((..(.(-(((((((((.((((((((.........))))))))))))....)))))).)..)))))))).....-............(((........)))...... ( -26.90) >consensus AAAGGGGAUUG_____CUGUUCCAUCUUAUGAUGGAACUUUCUAAAAUAGUACUGUAUGAAAGUGAGAUGAAAACCUAUCCCAAUAUUUAGGGGUUAAUGGCAAGUCACAAUGCAAAUGU ..................((((((((....))))))))...............(((((....((((..((.......(((((........)))))......))..)))).)))))..... (-18.33 = -18.77 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:06 2006