Locus 196

Sequence ID 3L_DroMel_CAF1
Location 551,669 – 551,773
Length 104
Max. P 0.916068
window284

overview

Window 4

Location 551,669 – 551,773
Length 104
Sequences 3
Columns 118
Reading direction forward
Mean pairwise identity 78.05
Mean single sequence MFE -33.33
Consensus MFE -22.01
Energy contribution -21.13
Covariance contribution -0.88
Combinations/Pair 1.16
Mean z-score -1.97
Structure conservation index 0.66
SVM decision value 1.11
SVM RNA-class probability 0.916068
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 551669 104 + 23771897
GUUGUGCAAGAAGUCCUUGCCAGG-----AGCAGAACUGGACCACGAGAGAGAGAGAGAGAGAGCAAUCGAACUUGUGGGCUGGCUGGGAGGA---------CCGAGGCGGCAGAGGA
.............(((((.((((.-----.......)))).(((((((...((..(........)..))...)))))))((((.((.((....---------)).)).)))).))))) ( -33.10)
>DroEre_CAF1 29566 92 + 1
GUUGUGCAAGAAGUCCUUGCCAGG-----AGCCGAACUGGUCCACGAGA------------GAGCAAUCGAAUUUGUGGGCUGGCUGGGAGGG---------CCGAGGAGGCAGAAGA
.((.(((......((((((((...-----..((.(.(..(((((((((.------------((....))...)))))))))..).).))..))---------.)))))).))).)).. ( -34.30)
>DroYak_CAF1 26536 106 + 1
GUUGUGCAAGAAGUCCUUGCCAGGACCGGAGCAGAACUGGUCCACGAGA------------GAGCUAUCAAAUUUGUGGGUUGGCUGGGAGGGGUGAGGAGACUGAGGAGGCAGAGGA
.((.(((....((((((..((.(((((((.......))))))).(.((.------------.((((..((....))..))))..)).)....))..))))..))......))).)).. ( -32.60)
>consensus
GUUGUGCAAGAAGUCCUUGCCAGG_____AGCAGAACUGGUCCACGAGA____________GAGCAAUCGAAUUUGUGGGCUGGCUGGGAGGG_________CCGAGGAGGCAGAGGA
.((.(((......((((.(((((......((.....))...(((((((........................))))))).))))).))))((..........))......))).)).. (-22.01 = -21.13 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:31 2006