Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,429,982 – 5,430,095 |
Length | 113 |
Max. P | 0.526685 |
Location | 5,429,982 – 5,430,095 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.56 |
Mean single sequence MFE | -30.62 |
Consensus MFE | -26.17 |
Energy contribution | -26.30 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.07 |
Mean z-score | -1.42 |
Structure conservation index | 0.85 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.526685 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5429982 113 - 23771897 GCCUCCAGUUGGGUUCCAUCUCAGCAUCUCACUCCAACUGGCCAUCUCUCAUCCGACCUCGACAAUUUUUGAAUAACUAAUGAAGGUGCCAGUUAAACGAGGAACGAGGAG-------CA ((.(((.((((((......)))))).((((.....(((((((.((((.((((......((((......)))).......)))))))))))))))....)))).....))))-------). ( -31.42) >DroSec_CAF1 160 113 - 1 GCCUCCAGUUGGGUUCCACCUCAGCAUCUCACUCCAACUGGCCAUCUCUCAUCCGACCUCGACUAUUUUUGAAUAACUAAUGAAGGUGCCAGUUAAACGAGGAACGAGCAG-------CA (((((..((((((......)))))).((((.....(((((((.((((.((((......((((......)))).......)))))))))))))))....))))...)))..)-------). ( -27.82) >DroSim_CAF1 201 113 - 1 GCAUCCAGUUGGGUUCCACCUCAGCAUCUCACUCCAACUGGCCAUCUCUCAUCCGACCUCAACUAUUUUUGAAUAACUAAUGAAGGUGCCAGUUAAACGAGGAACGAGCAG-------CA ((.....((((((......))))))..(((..((((((((((.((((.((((......((((......)))).......)))))))))))))))......)))..)))..)-------). ( -27.82) >DroEre_CAF1 134 120 - 1 GCCUCCAGUUGGGUUCCACCUCAGCAUCCCACUCCAACUGGCCACCUCCCAUCCGAACUCGACUAUUUUUGAAUAACUAAUGAAGGUGCCAGUUAAACGAGGAACGAGGAGCGAGGAGCG ((.(((.((((((......))))))....(.(((((((((((.((((..(((......((((......)))).......))).)))))))))))...((.....)).)))).).))))). ( -35.42) >consensus GCCUCCAGUUGGGUUCCACCUCAGCAUCUCACUCCAACUGGCCAUCUCUCAUCCGACCUCGACUAUUUUUGAAUAACUAAUGAAGGUGCCAGUUAAACGAGGAACGAGCAG_______CA .((((..((((((......))))))..........(((((((.((((.((((......((((......)))).......)))))))))))))))....)))).................. (-26.17 = -26.30 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:05 2006