| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,410,174 – 5,410,278 |
| Length | 104 |
| Max. P | 0.843626 |
| Location | 5,410,174 – 5,410,278 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.74 |
| Mean single sequence MFE | -26.78 |
| Consensus MFE | -20.26 |
| Energy contribution | -19.98 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.843626 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5410174 104 + 23771897 GAGCCAUUAUCUAUUGGGUAUACAAUUCGGUGAUGGUGUUGCCGAGCAAAAAGUAUAAAACCGACUACACGGAGAACUCCUAUCGGUAAGUCACUU--UUGG--------------ACAA ..(((((((((.((((......))))..))))))))).(((((((.......(((..........)))..(((....)))..)))))))(((.(..--..))--------------)).. ( -26.70) >DroPse_CAF1 22120 99 + 1 GGGCCAUCAUCUAUUGGGUGUACAAUUCGGUGAUGGUAUUGCCCAGCAAGAAGUACAAAACCGACUAUACGGAGAACUCCUAUCGGUAAGUGAA----------------A-----ACAG ((((.((((((.(((((((.....)))))))))))))...))))...............(((((...((.(((....))))))))))..((...----------------.-----)).. ( -26.50) >DroGri_CAF1 56244 96 + 1 GAGCCAUCAUAUAUUGGGUGUACAAUUCUGUGAUGGUAUUGCCGAGCAAGAAGUAUAAGACCGACUACACUGAGAACUCAUAUCGGUAUGUCAAAG------------------------ ..(((((((((.((((......))))..))))))))).((((...)))).............(((...(((((.........)))))..)))....------------------------ ( -22.70) >DroWil_CAF1 74281 116 + 1 GAGCCAUCAUCUAUUGGGUAUACAAUUCGGUGAUGGUUUUACCAAGCAAAAAGUAUAAAACCGACUACACUGAGAAUUCCUAUCGGUAAGUCAUCAAAUCAAU----CAAGUGAUAGCAU (((((((((((.((((......))))..)))))))))))......((...............((((..(((((.........))))).)))).....((((..----....)))).)).. ( -27.90) >DroAna_CAF1 20625 113 + 1 GGGCCAUCAUCUAUUGGGUGUAUAACUCGGUGAUGGUAUUGCCGAGCAAGAAAUACAAAACCGACUACACGGAGAACUCCUAUCGGUAAGUCAGUC--UAGAGACUACAAA-----ACAA ..(((((((((....((((.....))))))))))))).(((((((...............(((......)))((.....)).)))))))((.((((--....))))))...-----.... ( -30.10) >DroPer_CAF1 10582 99 + 1 GGGCCAUCAUCUAUUGGGUGUACAAUUCGGUGAUGGUAUUGCCCAGCAAGAAGUAUAAAACCGACUAUACGGAGAACUCCUAUCGGUAAGUGGU----------------A-----ACAG ..(((((((((.((((......))))..))))))))).((((((.((.....)).....(((((...((.(((....))))))))))..).)))----------------)-----)... ( -26.80) >consensus GAGCCAUCAUCUAUUGGGUGUACAAUUCGGUGAUGGUAUUGCCGAGCAAGAAGUAUAAAACCGACUACACGGAGAACUCCUAUCGGUAAGUCAA________________A_____ACAA ..(((((((((.((((......))))..))))))))).((((...))))..........(((((.((...(((....))))))))))................................. (-20.26 = -19.98 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:02 2006