Locus 1954

Sequence ID 3L_DroMel_CAF1
Location 5,408,047 – 5,408,151
Length 104
Max. P 0.885982
window3058

overview

Window 8

Location 5,408,047 – 5,408,151
Length 104
Sequences 4
Columns 106
Reading direction forward
Mean pairwise identity 92.86
Mean single sequence MFE -19.43
Consensus MFE -17.08
Energy contribution -17.07
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.89
Structure conservation index 0.88
SVM decision value 0.94
SVM RNA-class probability 0.885982
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5408047 104 + 23771897
UCUAUCUAU--CCGACCAUCCCAGCUUACCGGCAUCCAUCCAGGCAUCGUGCCAACCAAACACAAAACCAUCCUGGGUAUCUGGUUUUCGUGCCAUAUUCCUUCAU
.........--...................(((((....((((((.....))).............(((......)))...))).....)))))............ ( -17.30)
>DroSec_CAF1 3647 104 + 1
UCUAUCUAU--CCGACCAUCCCGGCUUACUGGCAUCCAUCCAGGCAUCCUGCCAACAAAACACACAACCAUCCCGGGUAUCUGGUUUUCGUGCCAUAUUCCUUCAU
.........--...........((..((.((((((....((((..((((.........................))))..)))).....))))))))..))..... ( -20.21)
>DroSim_CAF1 2484 104 + 1
UCUAUCUAU--CCGACCAUCCCGGCUUACUGGCAUCCAUCCAGGCAUCCUGCCAACCAAACACACAACCAUCCUGGGUAUCUGGUUUUCGUGCCAUAUUCCUUCAU
.........--...........((..((.((((((....((((..((((.........................))))..)))).....))))))))..))..... ( -20.81)
>DroYak_CAF1 2451 106 + 1
CCUAUCUAUACCUGAACAUCCCGGCUAACUGGCAUCCAUCCAGGCAUCCUGCCAGCCAAACAUACAACCAUUCUGGGUAUCUGGUUUUCGUGCCAUAUUCCUUCAU
......................((.....((((((....((((..((((.........................))))..)))).....))))))....))..... ( -19.41)
>consensus
UCUAUCUAU__CCGACCAUCCCGGCUUACUGGCAUCCAUCCAGGCAUCCUGCCAACCAAACACACAACCAUCCUGGGUAUCUGGUUUUCGUGCCAUAUUCCUUCAU
..............................(((((....((((((.....))).............(((......)))...))).....)))))............ (-17.08 = -17.07 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:59 2006