| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 548,408 – 548,514 |
| Length | 106 |
| Max. P | 0.876896 |
| Location | 548,408 – 548,514 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 94.97 |
| Mean single sequence MFE | -29.86 |
| Consensus MFE | -26.61 |
| Energy contribution | -26.61 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.876896 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 548408 106 - 23771897 UCAGAUAUGGCACUCGUGCAACAAAUUGCAGAGACAUGUUGCUGCUGCACGAAGAAGCAGGGCAUGGAAACAAACUGUCGCCUUUCUAAAAAACGAUGCAGAAAAA ..(((...(((..((.(((((....)))))))((((.((((((.((((........))))))).((....))))))))))))..)))................... ( -28.40) >DroEre_CAF1 26250 105 - 1 UCAGAUAUGGCACUCGUGCAACAAAUUGCAGAGACAUGUUACUGCUGCACGAAGAAGCG-GGCAUGGAAACAAACUGUCGCCUUUCUAAAAAACGAAGCAGUAAAA ...((((((...(((.(((((....)))))))).))))))((((((......(((((.(-((((((....))...)))).).))))).........)))))).... ( -27.36) >DroYak_CAF1 23109 106 - 1 UCAGAUGUGGCACUCGUGCAACAAAUUGCAGCGACAUGUUGCUGCUGCACGAAGAAGCGGGGCAUGGAAACAAACUGUCGCCUUUCUAAAAAACGAAGCAGAAAAC .....(((..(..(((((((.......(((((((....))))))))))))))(((((.((((((((....))...)))).))))))).......)..)))...... ( -33.81) >consensus UCAGAUAUGGCACUCGUGCAACAAAUUGCAGAGACAUGUUGCUGCUGCACGAAGAAGCGGGGCAUGGAAACAAACUGUCGCCUUUCUAAAAAACGAAGCAGAAAAA ..(((...(((..(((((((.......((((.((....)).)))))))))))........((((((....))...)))))))..)))................... (-26.61 = -26.61 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:30 2006