Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 548,408 – 548,514 |
Length | 106 |
Max. P | 0.876896 |
Location | 548,408 – 548,514 |
---|---|
Length | 106 |
Sequences | 3 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 94.97 |
Mean single sequence MFE | -29.86 |
Consensus MFE | -26.61 |
Energy contribution | -26.61 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.42 |
Structure conservation index | 0.89 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.876896 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 548408 106 - 23771897 UCAGAUAUGGCACUCGUGCAACAAAUUGCAGAGACAUGUUGCUGCUGCACGAAGAAGCAGGGCAUGGAAACAAACUGUCGCCUUUCUAAAAAACGAUGCAGAAAAA ..(((...(((..((.(((((....)))))))((((.((((((.((((........))))))).((....))))))))))))..)))................... ( -28.40) >DroEre_CAF1 26250 105 - 1 UCAGAUAUGGCACUCGUGCAACAAAUUGCAGAGACAUGUUACUGCUGCACGAAGAAGCG-GGCAUGGAAACAAACUGUCGCCUUUCUAAAAAACGAAGCAGUAAAA ...((((((...(((.(((((....)))))))).))))))((((((......(((((.(-((((((....))...)))).).))))).........)))))).... ( -27.36) >DroYak_CAF1 23109 106 - 1 UCAGAUGUGGCACUCGUGCAACAAAUUGCAGCGACAUGUUGCUGCUGCACGAAGAAGCGGGGCAUGGAAACAAACUGUCGCCUUUCUAAAAAACGAAGCAGAAAAC .....(((..(..(((((((.......(((((((....))))))))))))))(((((.((((((((....))...)))).))))))).......)..)))...... ( -33.81) >consensus UCAGAUAUGGCACUCGUGCAACAAAUUGCAGAGACAUGUUGCUGCUGCACGAAGAAGCGGGGCAUGGAAACAAACUGUCGCCUUUCUAAAAAACGAAGCAGAAAAA ..(((...(((..(((((((.......((((.((....)).)))))))))))........((((((....))...)))))))..)))................... (-26.61 = -26.61 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:30 2006