| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,402,004 – 5,402,124 |
| Length | 120 |
| Max. P | 0.802050 |
| Location | 5,402,004 – 5,402,124 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.61 |
| Mean single sequence MFE | -32.90 |
| Consensus MFE | -29.01 |
| Energy contribution | -28.13 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.802050 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5402004 120 + 23771897 AAAACGCAACAAAGGCAAUUGAUGUGCAAUGGAUAUGUCGUCAUAUAGCCCUGGUAACACCAGUUACACCAGAAAUCAGCGGUCACCAUGACGUCGACCGUAAAAGUAACUGUUGCAAUG .....((((((..(((...(((((.(((.......))))))))....)))((((((((....)))..)))))......((((((((......)).)))))).........)))))).... ( -32.70) >DroSec_CAF1 50724 116 + 1 AAAACGCAACAAAGGCAAUUGAAGUGCAA----UAUGUUGUCAUAUAGUCCUGGUAACACCAGUUACACCAGAAAUCAGCGGUCACCAUGACGUCGACCGUAAAAGUAACUGUUGCAAUG .....((((((...((...(((((..(.(----((((....))))).)..)).(((((....)))))........)))((((((((......)).))))))....))...)))))).... ( -29.60) >DroYak_CAF1 50978 120 + 1 AAAACGCAACAAAGGCAAUUGAGGUGCAAUGGAUAUGUCGUCAUAUAGCCCUGGUAGCACCGGUUACGCCAGAAAUCAGCGGUCACCAUGACGUUGACCGUAAAAGUAACUGUUGCAAUG .....((((((..(((......(((((.....(((((....))))).((....)).)))))......)))........(((((((.(.....).))))))).........)))))).... ( -36.40) >consensus AAAACGCAACAAAGGCAAUUGAAGUGCAAUGGAUAUGUCGUCAUAUAGCCCUGGUAACACCAGUUACACCAGAAAUCAGCGGUCACCAUGACGUCGACCGUAAAAGUAACUGUUGCAAUG .....((((((..(((...(((.(.(((.......)))).)))....)))((((((((....)))..)))))......((((((((......)).)))))).........)))))).... (-29.01 = -28.13 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:50 2006