| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,394,800 – 5,394,917 |
| Length | 117 |
| Max. P | 0.971865 |
| Location | 5,394,800 – 5,394,917 |
|---|---|
| Length | 117 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.16 |
| Mean single sequence MFE | -16.09 |
| Consensus MFE | -14.00 |
| Energy contribution | -14.50 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.87 |
| SVM decision value | 1.51 |
| SVM RNA-class probability | 0.960467 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5394800 117 + 23771897 UUGUCUGCAUUUCCAUUUCACUGCCAUUUCCCCCACAACCUUUUUCAUUUCUUUUCAUUCUCUUUGCCUCCGACGAGGCUGAAAAUAAAACCUUUCUGGCAUUCAAAUGUU--AUUUUU- .............(((((.(.(((((.......................................(((((....))))).((((........))))))))).).)))))..--......- ( -17.00) >DroSec_CAF1 43790 118 + 1 UUGUCUACAUUUCCAUUUCACUGCCAUUUCCCCCUCAACCUUUUCCACUGCUUUUCAUUCUUUUUGCCUCCGACGAGGCUGAAAAUAAAACCUUUCUGGCAUUCAAAUGUU--AUUUUUG .............(((((.(.(((((.......................................(((((....))))).((((........))))))))).).)))))..--....... ( -17.00) >DroSim_CAF1 43448 117 + 1 UUGUCUACAUUUCCAUUUCACUGCCAUUUCCCCCUCAACCUUUUCCACUGCUUUUCAUUCUUUUUGCCUCCGACGAGGCUGAAAAUAAAACCUUUCUGGCAUUCAAAUGUU--AUUUUU- .............(((((.(.(((((.......................................(((((....))))).((((........))))))))).).)))))..--......- ( -17.00) >DroYak_CAF1 43485 119 + 1 UUGUCUACAUUUCCAUUUCACUGCCAUUUCC-CCUCAACCAUUUUCAGUCCUUUUUUAUUUUUUUGUCUGCGACAAGCCUGAAAAUAAAACCUUUCUGGCAUUCAAAUGUUUUAUUUUUG .............(((((.(.(((((.....-........((((((((..............((((((...)))))).))))))))..........))))).).)))))........... ( -13.36) >consensus UUGUCUACAUUUCCAUUUCACUGCCAUUUCCCCCUCAACCUUUUCCACUGCUUUUCAUUCUUUUUGCCUCCGACGAGGCUGAAAAUAAAACCUUUCUGGCAUUCAAAUGUU__AUUUUU_ .............(((((.(.(((((.......................................(((((....))))).((((........))))))))).).)))))........... (-14.00 = -14.50 + 0.50)
| Location | 5,394,800 – 5,394,917 |
|---|---|
| Length | 117 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 91.16 |
| Mean single sequence MFE | -25.35 |
| Consensus MFE | -20.52 |
| Energy contribution | -21.02 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.19 |
| Structure conservation index | 0.81 |
| SVM decision value | 1.68 |
| SVM RNA-class probability | 0.971865 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5394800 117 - 23771897 -AAAAAU--AACAUUUGAAUGCCAGAAAGGUUUUAUUUUCAGCCUCGUCGGAGGCAAAGAGAAUGAAAAGAAAUGAAAAAGGUUGUGGGGGAAAUGGCAGUGAAAUGGAAAUGCAGACAA -......--..(((((.(.(((((......((((((((((.(((((....)))))...))))))))))(....)....................))))).).)))))............. ( -25.80) >DroSec_CAF1 43790 118 - 1 CAAAAAU--AACAUUUGAAUGCCAGAAAGGUUUUAUUUUCAGCCUCGUCGGAGGCAAAAAGAAUGAAAAGCAGUGGAAAAGGUUGAGGGGGAAAUGGCAGUGAAAUGGAAAUGUAGACAA .......--..(((((.(.(((((......((((.((((((((((..((.(..((..............))..).))..)))))))))).))))))))).).)))))............. ( -27.54) >DroSim_CAF1 43448 117 - 1 -AAAAAU--AACAUUUGAAUGCCAGAAAGGUUUUAUUUUCAGCCUCGUCGGAGGCAAAAAGAAUGAAAAGCAGUGGAAAAGGUUGAGGGGGAAAUGGCAGUGAAAUGGAAAUGUAGACAA -......--..(((((.(.(((((......((((.((((((((((..((.(..((..............))..).))..)))))))))).))))))))).).)))))............. ( -27.54) >DroYak_CAF1 43485 119 - 1 CAAAAAUAAAACAUUUGAAUGCCAGAAAGGUUUUAUUUUCAGGCUUGUCGCAGACAAAAAAAUAAAAAAGGACUGAAAAUGGUUGAGG-GGAAAUGGCAGUGAAAUGGAAAUGUAGACAA ...........(((((.(.(((((........((((((((((.((((((...)))).............)).))))))))))......-.....))))).).)))))............. ( -20.52) >consensus _AAAAAU__AACAUUUGAAUGCCAGAAAGGUUUUAUUUUCAGCCUCGUCGGAGGCAAAAAGAAUGAAAAGCAGUGAAAAAGGUUGAGGGGGAAAUGGCAGUGAAAUGGAAAUGUAGACAA ...........(((((.(.((((((((((......))))).(((((....))))).......................................))))).).)))))............. (-20.52 = -21.02 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:35 2006