| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,393,977 – 5,394,216 |
| Length | 239 |
| Max. P | 0.939374 |
| Location | 5,393,977 – 5,394,096 |
|---|---|
| Length | 119 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 94.42 |
| Mean single sequence MFE | -32.70 |
| Consensus MFE | -27.90 |
| Energy contribution | -27.15 |
| Covariance contribution | -0.75 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.557944 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5393977 119 - 23771897 GAGGUUAAAGGAAGGCAAACUUCUUGAUGCUUUUCAGGCGAAAGCGAGUCCGAUUUAGAAAGGAUUUGACCCAUUCGUCUGUUUG-CCGGGAAAAUGUAUCCCAAAAACUUAAAUUCCAU .........(((((((((((.....((......))(((((((..(((((((..........))))))).....))))))))))))-))((((.......))))...........)))).. ( -36.10) >DroSec_CAF1 42979 119 - 1 GAGGUUAAAGAAAGGCCAGCUUCUUGACGCUUUUCAGGCGAAAGCGAGUCCGAUUCAGAAAGGAUUUGACCCAUUCGUCUGUUUG-CCGGGAAAAUGUAUCUCAAAAACUUAAAUUCCAU (..(((.(((...(((.(((........)))...((((((((..(((((((..........))))))).....))))))))...)-))((((.......)))).....))).)))..).. ( -29.10) >DroSim_CAF1 42622 119 - 1 GAGGUUAAAGGAAGGCAAGCUUCUUGACGCUUUUCAGGCGAAAGCGAGUCCGAUUCAGAAAGGAUUUGACCCAUUCGUCUGUUUG-CCGGGAAAAUGUAUCUCAAAAACUUAAAUUCCAU .........(((((((((((.....((((........((....))(.(((.(((((.....))))).))).)...)))).)))))-))((((.......))))...........)))).. ( -32.90) >DroYak_CAF1 42676 119 - 1 GAGGUUAAAGGAAGGCAAACUUCUUGACGCUU-UCGGACGAAAGCGAGUCCGAUGCAGAAAGGAUUUGACCCAUUUGUCUGUUUGUCCGGGAAAAUGUAUCUCGAAAACUUAAAUUCCAU .........((((((((((((((((...((..-((((((........)))))).))...)))))...(((......))).)))))))(((((.......)))))..........)))).. ( -32.70) >consensus GAGGUUAAAGGAAGGCAAACUUCUUGACGCUUUUCAGGCGAAAGCGAGUCCGAUUCAGAAAGGAUUUGACCCAUUCGUCUGUUUG_CCGGGAAAAUGUAUCUCAAAAACUUAAAUUCCAU (..(((.(((...(((((((.....((......))(((((((..(((((((..........))))))).....)))))))))))).))((((.......)))).....))).)))..).. (-27.90 = -27.15 + -0.75)
| Location | 5,394,096 – 5,394,216 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 95.28 |
| Mean single sequence MFE | -25.40 |
| Consensus MFE | -23.49 |
| Energy contribution | -23.80 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.92 |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.939374 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5394096 120 - 23771897 UUUAUAAAUAUCUCUUAUUAUUUAUGCCCUCAGCUAAGCAUCUUUACACAUGCCCAUGCAAAUGCGUAAAUAUCCUUUUCAGGCACUAGAUUUAUGCACUCCAGAUGCUGGACUGAGUCA ..((((((((........))))))))..((((((((.((((((.......(((....)))..(((((((((..(((....)))......)))))))))....))))))))).)))))... ( -30.40) >DroSec_CAF1 43098 120 - 1 UUUACAAAUAUCUCUUAUUAUUUAUGCCCUCAGCUAAGCAGCCUUCCACAUGCCCAUGCAAAUGCGUAAAUAUCCUUUUCAGGCACUAGAUUUAUGCACUCCAGAUGCUGGACUGAGUCA .....(((((........))))).....((((((((.(((..((......(((....)))..(((((((((..(((....)))......)))))))))....)).)))))).)))))... ( -22.40) >DroSim_CAF1 42741 120 - 1 UUUAUAAAUAUCUCUUAUUAUUUAUGCCCUCAGCUAAGCAGCCUUCCACAUGCCCAUGCAAAUGCGUAAAUAUCCUUUCCAGGCACUAGAUUUAUGCACUCCAGAUGCUGGACUGAGUCA ..((((((((........))))))))..((((((((.(((..((......(((....)))..(((((((((..(((....)))......)))))))))....)).)))))).)))))... ( -25.50) >DroYak_CAF1 42795 117 - 1 UUUAUAAAUAUCUCUUAUUAUUUAUGCCCUCAGCUAAGCAGCUUUCCACAUGCCCAUGCAAAUGCGUAGAUAUCCUUUUAAGGC---AGAUUUAUGCACUCCAGAUGCUGGACUCAGUCA ..((((((((........))))))))....((((...(((((.........))...)))...(((((((((..(((....))).---..)))))))))........))))(((...))). ( -23.30) >consensus UUUAUAAAUAUCUCUUAUUAUUUAUGCCCUCAGCUAAGCAGCCUUCCACAUGCCCAUGCAAAUGCGUAAAUAUCCUUUUCAGGCACUAGAUUUAUGCACUCCAGAUGCUGGACUGAGUCA ..((((((((........))))))))..((((((((.(((..........(((....)))..(((((((((..(((....)))......))))))))).......)))))).)))))... (-23.49 = -23.80 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:30 2006