| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,392,834 – 5,392,954 |
| Length | 120 |
| Max. P | 0.635795 |
| Location | 5,392,834 – 5,392,954 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 96.42 |
| Mean single sequence MFE | -33.94 |
| Consensus MFE | -32.14 |
| Energy contribution | -31.94 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.635795 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5392834 120 - 23771897 AUAAAUGUCAAUUGCAGGACCUCGUUCAGAAAUUCUGAAUCUGCAUUGACUGGAAGAGAUGAUGUAGCGGGCCUAUUCAAAGUUCAAGACCCGCUGCGGCUCAUUACAUGUCCAAAAUGC ......((((((.((((......((((((.....))))))))))))))))((((.(.((((((((((((((.((............)).)))))))))..))))).)...))))...... ( -39.10) >DroSec_CAF1 41858 120 - 1 AUAAAUGUCAAUUGCAGGAGCUCGUUCUGAAAUUCUGAAUCUGCAUUGACUGGGAGAGAUGAUGUAGCGGGCCUAUUCAAAGUUCAAGACCCGCUGCGGCUCAUUACAUGUCCAAAAUGC ......((((((.((((......((((.(.....).))))))))))))))((((.(.((((((((((((((.((............)).)))))))))..))))).)...))))...... ( -33.60) >DroSim_CAF1 41489 120 - 1 AUAAAUGUCAAUUGCAGGACCUCGUUCUGAAAUUCUGAAUCUGCAUUGACUGGGAGGGAUGAUGUAGCGGGCCUAUUCAAAGUUCAAGACCCGCUGCGGCUCAUUACAUGUCCGAAAUGC ......((((((.((((......((((.(.....).))))))))))))))((((...((((((((((((((.((............)).)))))))))..))))).....))))...... ( -33.80) >DroEre_CAF1 41987 120 - 1 AUAAAUGUCAAUUGCAGGAGCUCGUUCUGAAAUCCUGAAUCUGCAUUGACUGGGAUAGAUGAUGUAGCGGGCCUAUUCAAAGUUCAAGACCCGCUGCGGCUCAUUACAUGUCCGAAAUGC ...(((((..(((.(((((..((.....))..))))))))..))))).....(((((((((((((((((((.((............)).)))))))))..)))))...)))))....... ( -35.70) >DroYak_CAF1 41547 120 - 1 AUAAAUGUCAAUUGCAGGAGCUCGUUCUGAAACUCUGAAUCUGCAUUGACUGGGAGCGAUGAUGUAGCGCGCCUAUUCAAAGUUCAAGACCCGCUGCGGCUCAUUACAUGUCCGAAAUGC ......((((((.(((((..(..(((....)))...)..)))))))))))((((.(..(((((((((((.(.((............)).).)))))))..))))..)...))))...... ( -27.50) >consensus AUAAAUGUCAAUUGCAGGAGCUCGUUCUGAAAUUCUGAAUCUGCAUUGACUGGGAGAGAUGAUGUAGCGGGCCUAUUCAAAGUUCAAGACCCGCUGCGGCUCAUUACAUGUCCGAAAUGC ......((((((.((((......((((.(.....).))))))))))))))((((...((((((((((((((.((............)).)))))))))..))))).....))))...... (-32.14 = -31.94 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:28 2006