Locus 1936

Sequence ID 3L_DroMel_CAF1
Location 5,392,202 – 5,392,301
Length 99
Max. P 0.555040
window3024

overview

Window 4

Location 5,392,202 – 5,392,301
Length 99
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 79.67
Mean single sequence MFE -23.06
Consensus MFE -9.58
Energy contribution -10.46
Covariance contribution 0.88
Combinations/Pair 1.37
Mean z-score -2.03
Structure conservation index 0.42
SVM decision value 0.04
SVM RNA-class probability 0.555040
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5392202 99 - 23771897
UAUUUAUGGAUUUGAAAGGGGAUAGCUU----UUUCAUCUUAUGAUGGAACUUUCUAAAAUAGUACUGCGUGGAAGUGAGAUGAAAACCUAUCCCAAUAUUUA
..................(((((((..(----(((((((((((..((((....))))........((....))..)))))))))))).)))))))........ ( -24.20)
>DroSec_CAF1 41227 99 - 1
UAUUUAUGGAUUUGAAUGGGGAUUGCUG----UUCCAUCUUAUGAUGGAACUUUCUAAAAUAGUACUGUAUGAAAGUGAGAUGAAAACCUAUCCCAAUAUUUA
((((((......))))))(((((....(----(((((((....))))))))........((..((((.......))))..))........)))))........ ( -22.20)
>DroSim_CAF1 40861 99 - 1
UAUUUAUGGAUUUGAAUGGAGAUUGCCG----UUCCAUCUUAUGAUGGAACUUUCUAAAAUAGUACUGUAUGAAAGUGAGAUGAGAACCUAUCCCAAUAUUUA
................(((.(((....(----(((((((....)))))))).((((...((..((((.......))))..)).))))...))))))....... ( -21.60)
>DroEre_CAF1 41370 93 - 1
UAUUUCUGGAUUUCAAAGG---------GGAUGUAUUUCUUAUCGCAGAACUUACAAAAAUAGUUCUGUAUGAAAGUAAGAUGGAAACCUAUCCCAAUAC-UA
..................(---------(((((..(((((.(((((((((((.........))))))))((....))..))))))))..)))))).....-.. ( -23.10)
>DroYak_CAF1 40914 103 - 1
UAUUUUAGAAUUUCAAAGGGAAGUGCAGGGAUGUAUUUCUUAGGAUGGAACUUUCUAAAGUAGUUCUGCAUGAAAGUGAGAUGGAAACCUAUCCCAAUAUUUA
(((((((((((((((..((((((((((....))))))))))....)))))..))))))))))......(((....))).(((((....))))).......... ( -24.20)
>consensus
UAUUUAUGGAUUUGAAAGGGGAUUGCUG____UUACAUCUUAUGAUGGAACUUUCUAAAAUAGUACUGUAUGAAAGUGAGAUGAAAACCUAUCCCAAUAUUUA
.................((((............((((((....))))))((((((....(((....)))..))))))..............))))........ ( -9.58 = -10.46 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:27 2006