Locus 1934

Sequence ID 3L_DroMel_CAF1
Location 5,390,645 – 5,390,759
Length 114
Max. P 0.602753
window3017

overview

Window 7

Location 5,390,645 – 5,390,759
Length 114
Sequences 4
Columns 114
Reading direction reverse
Mean pairwise identity 93.41
Mean single sequence MFE -13.15
Consensus MFE -12.56
Energy contribution -12.00
Covariance contribution -0.56
Combinations/Pair 1.14
Mean z-score -1.34
Structure conservation index 0.96
SVM decision value 0.14
SVM RNA-class probability 0.602753
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5390645 114 - 23771897
UAAGUGAGAAACUCCUUUGCCCUUUAUUAUCAUGGCUUGCACUUUACAAUGAAAUAUUGCUUUAUCCUUACGCCUUACUCAUUUUAAUUUGCCUUUCCCGUUUUACAUUUUCCC
.(((((.(((((......(((............)))..(((..(((.(((((..((..((...........))..)).))))).)))..))).......))))).))))).... ( -14.50)
>DroSec_CAF1 39660 113 - 1
UAAGUGAUGAACUCCUUUGCCCUUUAUUAUUAUGGCUUGCACUUUACAAUGAAAUAUUGCUUUAUCCUUACGCCUUACUCAUUUUAAUUUGCCU-UCCCGUUUCACAUUUUCCC
...((((..(((......(((............)))..(((..(((.(((((..((..((...........))..)).))))).)))..)))..-....)))))))........ ( -13.40)
>DroSim_CAF1 39302 113 - 1
UAAGUGAUGAACUCUCUUGCCCUUUAUUAUUAUGGCUUGCACUUUACAAUGAAAUAUUGCUUUAUCCUUACGCCUUACUCAUUUUAAUUUGCCU-UCCCGUUUCACAUUUUCCC
...((((..(((......(((............)))..(((..(((.(((((..((..((...........))..)).))))).)))..)))..-....)))))))........ ( -13.40)
>DroYak_CAF1 38568 114 - 1
UAAGUGAUAAACUCCUUUGCCCUUUAUUAUCAUGGCCUGCACUUUGCAAUGAAAUAUUGCUUCAUCCUUACGUCUUACUCAUUUUAAUUUGCUUUCCCCUUUUCACAUUUUCCC
...((((...........(((............)))..(((..(((.(((((..((..((...........))..)).))))).)))..)))..........))))........ ( -11.30)
>consensus
UAAGUGAUAAACUCCUUUGCCCUUUAUUAUCAUGGCUUGCACUUUACAAUGAAAUAUUGCUUUAUCCUUACGCCUUACUCAUUUUAAUUUGCCU_UCCCGUUUCACAUUUUCCC
...((((...........(((............)))..(((..(((.(((((..((..((...........))..)).))))).)))..)))..........))))........ (-12.56 = -12.00 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:21 2006