Locus 1933

Sequence ID 3L_DroMel_CAF1
Location 5,389,404 – 5,389,524
Length 120
Max. P 0.886200
window3016

overview

Window 6

Location 5,389,404 – 5,389,524
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.00
Mean single sequence MFE -24.22
Consensus MFE -23.65
Energy contribution -24.05
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.26
Structure conservation index 0.98
SVM decision value 0.94
SVM RNA-class probability 0.886200
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5389404 120 - 23771897
AAUAUCAUGAAAAGUUUGGCCACUAGGCAAAUAUUAAGUUUACUUUUGCUUAGAUGAAUAAUGUAACUGACACUCGAAAGGGCAAAAACUGUCUUCAAAUAUUCUUUGAGCAAACUUUGU
..........(((((((.(((....)))...................(((((((.(((((........(((((((....))).......))))......))))))))))))))))))).. ( -24.95)
>DroSec_CAF1 38405 119 - 1
AAUAUUAUGAAAAGUUUGGCCACGAGGCAAAUAUUAAAU-UACUUUUGCUUAGAUGAAUAAUGUAACUGACACUCGAAAGGCCAAAAACUGUCUUCAAAUAUUCUUUGAGCAAACUUUGU
..........(((((((.(((....)))...........-.......(((((((.(((((.(((.....)))...(((.(((........))))))...))))))))))))))))))).. ( -22.40)
>DroSim_CAF1 36906 120 - 1
AAUAUUAUGAAAAGUUUGGCCACGAGGCAAAUAUUAAGUUUACUUUUGCUUAGAUGAAUAAUGUAACUGACACUCGAAAGGGCAAAAACUGUCUUCAAAUAUUCUUUGAGCAAACUUUGU
..........(((((((.(((....)))...................(((((((.(((((........(((((((....))).......))))......))))))))))))))))))).. ( -24.95)
>DroEre_CAF1 38498 120 - 1
AAUAUCAUGAAAAGUUUGGCCAUGAGGCAAAUAUUAAGUUCACUUUUGCUUAGAUGAAUAAUGUUACUGACACUCGAAAGGGCAAAAACUGUCUUCAAAUAUUCUUUGAGCAAACUUUGU
..........(((((((.(((....)))...................(((((((.(((((........(((((((....))).......))))......))))))))))))))))))).. ( -24.95)
>DroYak_CAF1 37235 120 - 1
AAUAUCAUGAAAAGUUUGGCCAUGAGGCAAAUAUUAAGUUCACUUCUGCUUAGAUGAAUAAUGUUACUGACACUCGAAAGGGCAAAAACUGUCUUCAAAUAUUCUUUGAGCAAACUUCGU
......((((..(((((.(((....)))...................(((((((.(((((........(((((((....))).......))))......))))))))))))))))))))) ( -23.85)
>consensus
AAUAUCAUGAAAAGUUUGGCCACGAGGCAAAUAUUAAGUUUACUUUUGCUUAGAUGAAUAAUGUAACUGACACUCGAAAGGGCAAAAACUGUCUUCAAAUAUUCUUUGAGCAAACUUUGU
..........(((((((.(((....)))...................(((((((.(((((........(((((((....))).......))))......))))))))))))))))))).. (-23.65 = -24.05 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:20 2006