| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,387,941 – 5,388,044 |
| Length | 103 |
| Max. P | 0.996823 |
| Location | 5,387,941 – 5,388,044 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 65.32 |
| Mean single sequence MFE | -32.10 |
| Consensus MFE | -15.69 |
| Energy contribution | -18.99 |
| Covariance contribution | 3.30 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.93 |
| Structure conservation index | 0.49 |
| SVM decision value | 2.75 |
| SVM RNA-class probability | 0.996823 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5387941 103 - 23771897 -GGCCCAAAGUUUUG-GGCCAAAA--CUUUGCCGGCC-UGAUGCACUUGUUAAUGUUUAAGCACUGGCAAAA-----------ACUUGCUACUGGCAGCG-GCAGCAGCAGGAGCAACAA -((((((((((((((-...)))))--)))))..))))-((.(((.((((((..((((...((..((((((..-----------..))))))...))...)-)))..)))))).))).)). ( -36.90) >DroSec_CAF1 37037 103 - 1 ---NNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNUGGCAAAA-----------ACUUGCUGCUGGCAGCGGGCAGCAGCAGGAGCAACAA ---.....................--...........-..................................-----------.((((((((((.(....).))))))))))........ ( -19.50) >DroSim_CAF1 35472 104 - 1 -GGCCCAAAGUUUUGGGGCCAAAA--CUUUGCCGGCC-UGAUGCACUUGUUAAUGUUUAAGCACUGGCAAAA-----------ACUUCCUGCUAGCAGCG-GCAGCAGCAGGAGCAACAA -((((((((((((((....)))))--)))))..))))-((.(((..((((((.(((....))).))))))..-----------...(((((((.((....-...)))))))))))).)). ( -41.40) >DroEre_CAF1 37011 103 - 1 -GGCCCAAAGUUUUG-GGCCAAAA--CUUUGCCGGCC-UGAUGCACUUGUUAAUGUUUAAGCACUGGCAAAA-----------ACUUACUGUUGGCAGCG-GCAGCAGCAGGAGCCACAA -(((((((....)))-))))....--.((((((((.(-(...(((........)))...))..)))))))).-----------.(((.((((((.(...)-.)))))).)))........ ( -33.60) >DroWil_CAF1 28607 106 - 1 UGUAGCAAAGUUUUG-G--CAAAA-CUUCUGGCGGCUUUGAUGCACUUGUUAAUGUUUGAGAACAAAAAAAAAACCUCUAAGAACUUGUUG---GU-------UUCGACAAGAGCAACAA (((..((((((..((-.--((...-....)).)))))))).(((.((((((..((((....))))......(((((..(((....)))..)---))-------)).)))))).)))))). ( -21.40) >DroYak_CAF1 35714 105 - 1 -GGCCCGAAGUUUUG-GGCCAAAAACUUUUGCCGGCC-UGAUGCACUUGUUAAUGUUUAAGCACUGGCAAAA-----------ACUUGCUGUUAGCAGCG-GCAGCAGCAGGAGCAACAA -(((((((....)))-))))......(((((((((.(-(...(((........)))...))..)))))))))-----------.(((((((((.((....-)))))))))))........ ( -39.80) >consensus _GGCCCAAAGUUUUG_GGCCAAAA__CUUUGCCGGCC_UGAUGCACUUGUUAAUGUUUAAGCACUGGCAAAA___________ACUUGCUGCUGGCAGCG_GCAGCAGCAGGAGCAACAA .(((((((....))).)))).......((((((((.......(((........))).......)))))))).............(((((((((.((.....)))))))))))........ (-15.69 = -18.99 + 3.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:19 2006