Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 545,642 – 545,747 |
Length | 105 |
Max. P | 0.617257 |
Location | 545,642 – 545,747 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.72 |
Mean single sequence MFE | -20.58 |
Consensus MFE | -17.54 |
Energy contribution | -17.35 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.05 |
Mean z-score | -1.49 |
Structure conservation index | 0.85 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.617257 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 545642 105 + 23771897 CAGACUAA--AAAAAA-------AAAAAUCCAAGCGACCUUUAAGCGGUCGUCAACAUU-UUGUUUACUUCAACACAAAGUCGUUUCGCUAG-----UCUAGCCACAUGGAAAAACGCAA .((((((.--......-------..........((((((.......)))))).((((((-((((..........))))))).)))....)))-----)))..((....)).......... ( -18.40) >DroEre_CAF1 23520 109 + 1 CAGACUAA--AAAAAA---UUUAUAAAAACCGAGCGACCUUUAAGCGGUCGUCAACACU-UUGUUUACUUCAACACAAAGUCGUUUCGCUGG-----UCUAGCCACAUGGAAAAAUGCAA .((((((.--......---............((.(((((.......)))))))((((((-((((..........))))))).)))....)))-----)))..((....)).......... ( -20.80) >DroYak_CAF1 20298 111 + 1 CAGACUAAGAAAAAAA---UAAAUAAAAACCAAGCGACCUUUAAGCGGUCGUCAACACU-UUGUUUACUUCAACACAAAGUCGUUUCGCUAG-----UCUAGCCACAUGGAAAAAUGCAA .((((((.((((....---..............((((((.......))))))....(((-((((..........)))))))..))))..)))-----)))..((....)).......... ( -22.20) >DroAna_CAF1 24764 118 + 1 CAGACUGA--AAAAAAAAAACAAGAAAAUACAAGCGACCUUUAAACGGUCGUCAACAUUGCUGUUUACUUCAAUACAAAGUCGUCUCGCUAGCCCAGCCUAGCCGCUUGGAAAAUCGCAA ........--.............((.....((((((.....((((((((.((....)).))))))))....................(((((......))))))))))).....)).... ( -20.90) >consensus CAGACUAA__AAAAAA___U_AAUAAAAACCAAGCGACCUUUAAGCGGUCGUCAACACU_UUGUUUACUUCAACACAAAGUCGUUUCGCUAG_____UCUAGCCACAUGGAAAAACGCAA ..((((...........................((((((.......)))))).((((....)))).............)))).....(((((......)))))................. (-17.54 = -17.35 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:25 2006