| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,382,760 – 5,382,872 |
| Length | 112 |
| Max. P | 0.679173 |
| Location | 5,382,760 – 5,382,872 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 89.83 |
| Mean single sequence MFE | -30.02 |
| Consensus MFE | -23.57 |
| Energy contribution | -24.30 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.64 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.679173 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5382760 112 - 23771897 GGUAGCUAAUGAGAUAAGCAUGCAAAUGCCAGUGGCAGGACGA-------AA-AAAGGGUAAGAAAAAUAGAGGGCCAGAAUAAAGUCAAGUUCUGUCGGUGGCAGCAGCAGGACGAGUC ....(((.........))).(((...(((((.(((((((((..-------..-....(((..............))).((......))..))))))))).)))))...)))......... ( -29.64) >DroSec_CAF1 31987 112 - 1 GGUAGCUAAUGAGAUAAGCAUGCAAAUGCCAGUGGCAGGACGA-------AA-AAAGGGUAAGAAAAAUAGAAGGCCAGAAUAAAGUCAAGUUCUGUCGGUGGCAGCAGCAGGACGAGUC ....(((.........))).(((...(((((.(((((((((..-------..-....(((..............))).((......))..))))))))).)))))...)))......... ( -29.64) >DroSim_CAF1 30185 112 - 1 GGUAGCUAAUGAGAUAAGCAUGCAAAUGCCAGUGGCAGGACGA-------AA-AAAGGGUAAGAAAAAUAGAAGGCCAGAAUAAAGUCAAGUGCUGUCGGUGGCAGCAGCAGGACGAGUC ....(((.........))).(((...(((((.((((((.((..-------..-....(((..............))).((......))..)).)))))).)))))...)))......... ( -27.84) >DroEre_CAF1 32029 110 - 1 GGUAGCUAAUGAGAUAAGCAUGCAAAUGCCAGUGGCAGGACCA-------A--AAAGGGUAAGAAAAAGA-AGGCCCAGAAUAAAGUCAAGUUCUGUCAGUGGCAGCAGCAGGACGAGUC ....(((.........))).(((...(((((.(((((((((..-------.--...((((..........-..)))).((......))..))))))))).)))))...)))......... ( -33.10) >DroYak_CAF1 30620 113 - 1 GGUAGCUAAUGAGAUAAGCAUGCAAAUGCCAGUGGCAGGACGA-------AAAAAAGGGUAAGAAAAAUAGAAGCCCAGAAUAAAGUCAAGUUCUGUCAGUGGCAGCGGCAGGACGAGUC ....(((.........))).(((...(((((.(((((((((..-------......((((.............)))).((......))..))))))))).)))))...)))......... ( -34.92) >DroAna_CAF1 29848 119 - 1 GGUAGCUAAUGAGAUAAGCAUGCAAAUGCCAGGAGCAGCAGGAUCAGAACAA-AACGUCCAAGGAUAAUAGACGUCCAGAAUGAAGUCAACUUCUGUCGGUGCCAGAAACAGGACGAGUC .((.(((..((......((((....))))))..))).)).............-..(((((..((((.......)))).((..((((....))))..)).............))))).... ( -25.00) >consensus GGUAGCUAAUGAGAUAAGCAUGCAAAUGCCAGUGGCAGGACGA_______AA_AAAGGGUAAGAAAAAUAGAAGGCCAGAAUAAAGUCAAGUUCUGUCGGUGGCAGCAGCAGGACGAGUC ....(((.........))).(((...(((((.(((((((((...............((.................)).((......))..))))))))).)))))...)))......... (-23.57 = -24.30 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:08 2006