| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,381,699 – 5,381,792 |
| Length | 93 |
| Max. P | 0.552122 |
| Location | 5,381,699 – 5,381,792 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.55 |
| Mean single sequence MFE | -20.57 |
| Consensus MFE | -10.62 |
| Energy contribution | -10.77 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.552122 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5381699 93 - 23771897 ----AAGAGGAGAA-AAACCUUUCAGC-AGAA-----------AGCAUUCGGAUAUAUAUGCAAAAAGGUAUUGUAGCCUUCUGCUGUCCAUUA----UCUGGAUACGAAA------CAU ----.(((((....-...)))))((((-((((-----------.((((..........)))).....(((......)))))))))))((((...----..)))).......------... ( -21.90) >DroSec_CAF1 30930 91 - 1 ----AAGAGGAGAA-AAACCUUUCAGC-AGAA-----------AGCAUUUGGAUA--UAUGCAAAAAGGUAUUGUAGCCUUCUGCUGUCCAUUA----UCUGAAUACGAAA------CAU ----.(((((....-...)))))((((-((((-----------.((((.......--.)))).....(((......))))))))))).......----.............------... ( -20.00) >DroSim_CAF1 29133 91 - 1 ----AAGAGGAGAA-AAACCUUUCAGC-AGAA-----------AGCAUUUGGAUA--UAUGCAAAAAGGUAUUGUAGCCUUCUGCUGUCCAUUA----UCUGAAUCCGAAA------CAU ----....(((...-........((((-((((-----------.((((.......--.)))).....(((......))))))))))).......----......)))....------... ( -21.15) >DroEre_CAF1 30943 91 - 1 ----AUGAGGAGGA-AAACCUUUCAGC-AGAG-----------AGCAUUCGGAUA--UAUGCAAAAAGGUAUUGUAGCCUUCUGCUGUCCAUUA----UCUGUAUACAAAA------UAC ----....(((((.-...))...((((-(((.-----------.((((.......--.))))....((((......))))))))))))))....----.............------... ( -21.10) >DroYak_CAF1 29534 93 - 1 ----AAGAGGAGUAAAAACCUUUCAGCGAGAA-----------AGCAUUCGGAUA--UAUGCAAAAAGGUAUUGUAGCCUUCUGCUGUCCAUUA----UCUGGAUACAAAA------CAC ----.(((((........)))))((((.((((-----------.((((.......--.)))).....(((......)))))))))))((((...----..)))).......------... ( -19.30) >DroAna_CAF1 28782 115 - 1 GGCAAACAAGGACA-AAACCUUUUAGU-AAAAUCCUAAAAAAAAGG-GAAGGGAG--UAUGUAAAAAAGUAUUGUAACCUUAUACUGUCCAUUGAGUAGCCUAAAACAAAAUAGAAACAA ((((..((((((((-...((((((..(-(......))...))))))-.((((.((--(((........)))))....))))....))))).)))..).)))................... ( -20.00) >consensus ____AAGAGGAGAA_AAACCUUUCAGC_AGAA___________AGCAUUCGGAUA__UAUGCAAAAAGGUAUUGUAGCCUUCUGCUGUCCAUUA____UCUGAAUACAAAA______CAU .....(((((........)))))...........................(((((.....(((..(((((......))))).)))))))).............................. (-10.62 = -10.77 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:07 2006