Locus 1925

Sequence ID 3L_DroMel_CAF1
Location 5,380,612 – 5,380,706
Length 94
Max. P 0.709989
window3002

overview

Window 2

Location 5,380,612 – 5,380,706
Length 94
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 87.38
Mean single sequence MFE -28.45
Consensus MFE -21.85
Energy contribution -23.22
Covariance contribution 1.36
Combinations/Pair 1.04
Mean z-score -2.77
Structure conservation index 0.77
SVM decision value 0.37
SVM RNA-class probability 0.709989
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5380612 94 + 23771897
AUUCAGGGAA-UCCGUCGAGAAGAGGGAUAUGUUGGCCAUAUGAAAUGGCAUUAGAUGACCCGAAAGGGGAAAGGCCAUAAAUCCCACUGGAUGG
((((((((.(-(((.((.....)).))))....(((((..(((......))).......(((....)))....)))))......)).)))))).. ( -31.80)
>DroSec_CAF1 29874 94 + 1
AUUCGGGGAA-UCCGUCGAGAAGAGGAAUACGCUGGCCAUAUGAAAUGGCAUUAGAUGACCCGAAAGGGGAAAGGCCAUAAAUCCCACUGGAUGG
((((.((((.-(((.((.....)))))....(((.(((((.....))))).........(((....)))....)))......))))...)))).. ( -28.10)
>DroSim_CAF1 28049 94 + 1
AUUCAGGAAA-UCCGUCGAGAAGAGGAAUACGUUGGCCAUAUGAAAUGGCAUUAGAUGACCCGAAAGGGGAAAGGCCAUAAAUCCCACUGGAUGG
..........-.(((((.((..(.(((...((((.(((((.....)))))....)))).(((....))).............)))).)).))))) ( -27.30)
>DroEre_CAF1 29956 94 + 1
AUCCAGGCGAA-CCGUCGAGAAGAGGGAUACAUUGUCCAUAUGAAAUGGCAUUAGAUGACCCGAAAGGGGAAAGGCCAUAAAUCCCACUGGAUGG
((((((.(((.-...)))......(((((.(((.......)))..(((((.........(((....))).....)))))..))))).)))))).. ( -30.74)
>DroYak_CAF1 28457 95 + 1
AUCCUGGGGAAUUCGUCGAGAAGAGGGAUACGUUGUCCAUAUGAAAUGGCAUUAGAUGACCCGAAAGGGGAAAGGCCAUAAAUCCCACUGGAUGG
((((..((((((((.((.....)).))))................(((((.........(((....))).....)))))...))))...)))).. ( -29.84)
>DroAna_CAF1 27699 78 + 1
------A-----C------CAAGAAGGAUAUGCUGGCCAUAUGAAAUGGCAUUAGAUGACCCGAAGGGGGAAAGGCCAUAAAUCCCACUGGAUGG
------.-----(------((.(..((((.((.(((((..(((......))).......(((....)))....))))))).))))..)))).... ( -22.90)
>consensus
AUUCAGGGAA_UCCGUCGAGAAGAGGGAUACGUUGGCCAUAUGAAAUGGCAUUAGAUGACCCGAAAGGGGAAAGGCCAUAAAUCCCACUGGAUGG
............(((((....((.(((((....(((((..(((......))).......(((....)))....)))))...))))).)).))))) (-21.85 = -23.22 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:06 2006