Locus 1923

Sequence ID 3L_DroMel_CAF1
Location 5,378,352 – 5,378,444
Length 92
Max. P 0.912574
window2998

overview

Window 8

Location 5,378,352 – 5,378,444
Length 92
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 87.71
Mean single sequence MFE -18.74
Consensus MFE -13.70
Energy contribution -14.10
Covariance contribution 0.40
Combinations/Pair 1.10
Mean z-score -2.41
Structure conservation index 0.73
SVM decision value 1.08
SVM RNA-class probability 0.912574
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5378352 92 + 23771897
UAAACCA---AAAAAAAUCGAGA-GAAAUGCAAAAUGCUUUGCGGUGA--UGCGAGAAAUAGAACAAACUGUAAGCCAUUGCCGCACAUUGCUAAUAC
.......---.......((....-))...(((..(((...(((((..(--((.(....((((......))))...))))..)))))))))))...... ( -19.70)
>DroSec_CAF1 27645 91 + 1
UAAACCA---AAAAAAAAAAAAA--AAAUGGAAAAUGCUUUGCGGUGA--UGCGAAAAAUAGAACAAACUGUAAGCCAUUGCCGCACAUUGCUCAUAC
.......---.............--..((((..((((...(((((..(--((.(....((((......))))...))))..)))))))))..)))).. ( -19.70)
>DroSim_CAF1 25806 93 + 1
UAAACCA---AAAAAAAAAAAAACCAAAUGGAAAAUGCUUUGCGGUGA--UGCGAGAAAUAGAACAAACUGUAAGCCAUUGCCGCACAUUGCUCAUAC
.......---.................((((..((((...(((((..(--((.(....((((......))))...))))..)))))))))..)))).. ( -19.70)
>DroEre_CAF1 27701 93 + 1
UAAACGAACAAAAAAAAUCCAGA-GAAAUGGAAAAUGCUUUGCGGUGA----UGAGAAAUAGAACAACCUGUGAGCACUUGCUGCACAUUGCUCAUAC
.....((.(((......((((..-....))))........(((((..(----((....((((......))))...)).)..)))))..))).)).... ( -18.30)
>DroYak_CAF1 26182 94 + 1
UAAACGA---AAAAAAAUCAAGA-GAAAUGGAAAAUGCUUUGCGGUGAGAUGCGAGAAAUAGAACAAAAUGUGAGCAAUUGCUGCACAUUGCUCAUAC
.......---...........((-(.............((((((......))))))...........(((((((((....))).)))))).))).... ( -16.30)
>consensus
UAAACCA___AAAAAAAUCAAGA_GAAAUGGAAAAUGCUUUGCGGUGA__UGCGAGAAAUAGAACAAACUGUAAGCCAUUGCCGCACAUUGCUCAUAC
...........................((((..((((...(((((..(...((.....((((......))))..))..)..)))))))))..)))).. (-13.70 = -14.10 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:03 2006