Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,374,710 – 5,374,812 |
Length | 102 |
Max. P | 0.947012 |
Location | 5,374,710 – 5,374,812 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 81.17 |
Mean single sequence MFE | -22.98 |
Consensus MFE | -12.80 |
Energy contribution | -13.16 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.05 |
Mean z-score | -2.61 |
Structure conservation index | 0.56 |
SVM decision value | 1.37 |
SVM RNA-class probability | 0.947012 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5374710 102 - 23771897 GCACAAAAUAAUCAGAUUUGG------GUAGAAUGCAAUGUGAAAAGCUUUUAA---UGGCAUUUGCGUAAAUUAAAUGCUAUUAAAAUUAUUUUCAUAGCUGCU--GCUACU ....................(------((((...(((.((((((((..((((((---(((((((((.......)))))))))))))))...))))))))..))).--.))))) ( -30.30) >DroVir_CAF1 41454 99 - 1 GCACAAAAUAAUCAGAUUUGGCAUUGUGAAAA-------GUGAAAAGCUUUUAACUGUUGCACUUGCGUAAAUUAAAUGCCAUUAAAAUUAUUUUCAUAGC-GCUGC------ ((..((((((((......(((((((.((..((-------(((...(((........))).)))))...)).....))))))).....))))))))....))-.....------ ( -19.50) >DroGri_CAF1 67837 106 - 1 GCACAAAAUAAUCAGAUUUGGCAUUGUGAAAAGUGGAAAGUGAAAAGCUUUUAACUGUUGCAUUUGCGUAAAUUAAAUGCCAUUAAAAUUAUUUUCACAGC-GUUGC------ ((..((((((((......(((((((......(((.((((((.....)))))).)))...((....))........))))))).....))))))))....))-.....------ ( -20.80) >DroSim_CAF1 22108 96 - 1 GCGCAAAAUAAUCAGAUUUGG------GUAGAAUGAAAAGUGAAAAGCUUUUAA---UGGCAUUUGCGUAAAUUAAAUGCUAUUAAAAUUAUUUUCAUAGCUG--------CU ((((.......(((.......------......)))...(((((((..((((((---(((((((((.......)))))))))))))))...))))))).)).)--------). ( -22.62) >DroAna_CAF1 22777 92 - 1 GCACAAAAUAAUCAGAUUUGG------GUAAAGUGAAAAGUGAAAAGCUUUUAA---UGGCAUUUGCGUAAAUUAAAUGCUAUUAAAAUUAUUUUCACAGA------------ .(((.......((......))------.....)))....(((((((..((((((---(((((((((.......)))))))))))))))...)))))))...------------ ( -21.70) >consensus GCACAAAAUAAUCAGAUUUGG______GUAAAAUGAAAAGUGAAAAGCUUUUAA___UGGCAUUUGCGUAAAUUAAAUGCUAUUAAAAUUAUUUUCAUAGC_G_U________ .......................................(((((((..((((((...(((((((((.......)))))))))))))))...)))))))............... (-12.80 = -13.16 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:02 2006